Gene detail

Detail information of MD09G1027200 Annotation

Gene ID	Annotation
MD09G1027200	DNA-binding bromodomain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0617	nitrate transport response to nitrate BRD

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1027200	mRNA	Chr09	1686315	1690780	-

Sequences

CDS:

MD09G1027200

CTTACCGCGACAATTTGCGTGCTGGTTGTCACTGCAAGGACCCCAGATAAAATCAAAGGTATTCAAAACCCTAAATCCCCAATTGTCCAACTTCCCCAAATCCTGATCTCCTGCGGCCCAATTCATACAGGAAAGAGATCATGAAGCGGAAACAAGCATTCCCGGGAAGGGAAAGGGGAAGGGGAAGGGGAAGGCCACGAAAAAATCCGGCTCCGGAGGTGGTCAGTGAAAGAGTGGTCAGTGAGAGAGTGGTCAGTGAAAGATTGGTCAATGAGAGAGTGGTCAATGAGAATGAGAAAGCATTCTTGAATTTTGTTAGTCAGAATGTTGAAGAAGAAAGAAATGATTTTGGGTGGAATCAATCCGATGACGAAGACTGTGATGATGAGGAATGTAACCCTGAATTGGAGAATGATTCGGTTAGTGATCCTTCTTCGATGGAGAGTGATTGGTCAGATGGTGATCAAAATGTAAGCACCGTGGTGCAGAACTTGCTTAGCAGGTATGGTGAAGGGGATCGCCAGACGGGAAACTCATCCAACCAGAATGATAGTGCGCAAAATATGCCATTGACTGTCTTGGGTTCTTGGAGTAGATTCCAGAATGAGCAAGTATCGCCATTGCAGGATCCTCCCTGTAACAAGAAAGAATTGAGTGCTGCCCTGGCGGTCATTAAGAAGGTTATGAAAATGGATGCAGCTGTACCTTTCAACACTCCCGTGGATCCAGTTGCTATGAGATTACCTGATTACTTTGATGTCGTAGATACTCCAATGGATTTTGGAACGATATGCAGCCATCTTCAAAATGGTACCAAGTATATGAACGCGGAGGATGTATTCAAGGATGTCCAATACATTTGGAAGAACTGTTGCAACTATTACAATGAGGGTAACTTTGTTTTGAACCTTAAGAAACGCGTGGAGGAGAAATTCATGAAATATTGGACAGCTGCTGGTTTGGGCAGTAAAGAACCCGGGGCAAGTAACCTTTTACTAAGCTCTAATGTGGGGAAAAGGAAGACGCGAGGACCTACCCGTAACCTTAGACTAGCTCAACTTCCTATTGGGGAAAGATTTGAAGTCAGCTGGAAGAACCGGAGACCCGTAGGTGAAACCACCACTTTCTTCAAATCAGAGTGTACAGCCCTGGTTAGGCAAACCCGGGAGATACCCCTACAGGTTAAGTCATGGAAGGAAATCCCATCTGATATTAAACAGAAGGCATTTGAACATATGTTGAAGCGTTTCAAAGTCGAAGATCACATGAAATGGGTTTTGGATCAGATTCATAGATCCTACAACAGTTATCGGCATCACCTGAAGACGACGTGGTTTGAAACATGTGAGACAACTGAGGATGCACGTGAAAAAGTACCACCAAATGTTACAGAGGAGGATTGGCAGTATCTTGTAAACTTGTGGACCTCACCTGAATGGCAGAAAATCAGTAAGCAATACAAGGAGAATCGTTCCAAGAATACCATAATTCACACGTGTGGGTCCAAGAGTTTCTCTCAAGTCCTCGAGGAAGAGAAAAAGAAGACTGGAAATGAGCCTGGCCGTACACTTTTCTGGGAACGCACCCATGTTCGGCATGATGGACAGGCTCCAAATCCAGCTACACAGGAGGCATTGTCAAAGCTCAAGAAATTGTATGCTCAAGTGGCTGCGGAGAACTCACAGATGACAGAAGACGAGATTTTTGTAAAGGTTTTTGGACCTGAGCGTCCCTCGAGATTACGTGGTTACGGTGGTGTAACCCCAAAAGAGTTATGGGGAACACCGTCATCGTCATCGTCATATACTGTTAGTGAACTCAAAAGGCAACTTGAAGAAACAAAGCAGCGACAAGAGGAGTATGAACAAAAGAGTGCTGCTGAGATACAGGGCTTGAAAGAGCAATTTGGTCGTCTTGAGGGTTTGCTATCAGATCAAATGAATAGGTTTGAAGGTTTACTAGTACAGTTGACGAGTCATATGCAGCCCCCTTCCCCGATTGAGAGGCCTACTGGACATCTACTCACCCGAAATGGCCATCCACGGAGTTTCCGATCCAGAAGATGAAATCTCATCACTTATCAGCTATGCCTGTGTCTTGTTGGGTCAAATAAGGCTGTTGGCGGAAAATCAACCTAGACACCGCGGCAATGGCGAAAGGGTTGGCGAGCGGTCGCCGACGGCCACCATGGAGAGCGATGAACCAATGACTTTTTGAATAGACTTAGACTTCACTAAAATCTTGATTGATTGAGTTCTCTGATCAATATCGAACAGAGAACAACCATGTTTGCTTCCCAACTAGGTCGTGTATTTCAAGAGAAAAACTTGTGTGGGAACATCCGGACCTGCTCTCCTTCTTGCAAAACTTAGATCATTTGTTGTTAACTATTTTATTTATTCTATCTTTCGATTTATGGCAAGTGCCTTCGCCCATGAGCGATAGGTATCGGGTTCGAGACTTGGGAGCAGCCTCTCCATAAATGGGGGTAAG

Protein:

Gene family

Gene family	Subfamily
Epigenetic Regulators	BRD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G105300.3.p	1	DNA-binding bromodomain-containing protein
Prunus persica	Prupe.7G105300.2.p	1	DNA-binding bromodomain-containing protein
Prunus persica	Prupe.7G105300.1.p	0.972	DNA-binding bromodomain-containing protein
Prunus persica	Prupe.7G105300.4.p	0.972	DNA-binding bromodomain-containing protein
Prunus persica	Prupe.1G578800.1.p	0.71	DNA-binding bromodomain-containing protein
Pyrus communis	PCP008409.1	1	-
Pyrus x bretschneideri	Pbr024452.1	1	-
Rubus occidentalis	Ro07_G23744	1	-
Fragaria vesca	mrna05808.1	1	Plant transposase (Ptta/En/Spm family)
Vitis vinifera	GSVIVT01000866001	1	Plant transposase (Ptta/En/Spm family)
Populus trichocarpa	Potri.004G223600.1	1	DNA-binding bromodomain-containing protein
Nicotiana benthamiana	Niben101Scf02349g00005.1	1	OsJ_16109 [Oryza sativa Japonica Group]
Oryza sativa	LOC_Os02g34120.1	1	expressed protein
Oryza sativa	LOC_Os09g16780.1	1	hypothetical protein
Oryza sativa	LOC_Os12g35950.1	1	"transposon protein, putative, CACTA, En/Spm sub-class"
Zea mays	GRMZM2G041171_P01	1	-
Zea mays	GRMZM2G070041_P01	0.774	-
Zea mays	GRMZM2G129196_P01	0.77	-
Zea mays	GRMZM2G088293_P01	0.603	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.21	Bromodomain	78	156	1.90E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.77087
SRR5252888	dormant buds	no	dormant buds(0 month)	7.18735
SRR5252889	dormant buds	no	dormant buds(0 month)	8.25114
SRR5252886	dormant buds	no	dormant buds(1 months)	5.51096
SRR5252887	dormant buds	no	dormant buds(1 months)	6.25045
SRR5252884	dormant buds	no	dormant buds(2 months)	8.37648
SRR5252882	dormant buds	no	dormant buds(3 months)	7.00096
SRR5252883	dormant buds	no	dormant buds(3 months)	7.01844
SRR5252880	dormant buds	no	dormant buds(4 months)	6.00883
SRR5252881	dormant buds	no	dormant buds(4 months)	5.54503
SRR5252878	bud break	no	bud break	8.42072
SRR5252879	bud break	no	bud break	9.68493
SRR3744766	flower	no	mature	6.99082
SRR3744767	flower	no	mature	7.3647
SRR3744768	flower	no	mature	7.32225
SRR6308190	stigmas	no	open flowers	2.51812
SRR6308181	styles	no	open flowers	3.56512
SRR6308188	filaments	no	open flowers	4.04415
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.7767
SRR6308192	pollen	no	open flowers	2.54119
SRR6308191	petals	no	open flowers	4.75875
SRR6308194	sepals	no	open flowers	6.04875
SRR6308193	receptacles	no	open flowers	4.15567
SRR6308189	ovaries	no	open flowers	2.9903
SRR3384922	fruit	no	1 week after full bloom	4.2599
SRR3384921	fruit	no	2 week after full bloom	4.18544
SRR3384920	fruit	no	3 week after full bloom	4.90339
SRR3384919	fruit	no	4 week after full bloom	4.38574
SRR3384923	fruit	no	5 week after full bloom	3.62201
SRR3384918	fruit	no	6 week after full bloom	3.97095
SRR3384917	fruit	no	8 week after full bloom	4.14543
SRR3384916	fruit	no	10 week after full bloom	3.83842
SRR3384915	fruit	no	12 week after full bloom	2.98253
SRR3384914	fruit	no	14 week after full bloom	3.84588
SRR3384913	fruit	no	16 week after full bloom	2.94244
SRR3384912	fruit	no	18 week after full bloom	2.94299
SRR3384911	fruit	no	19 week after full bloom	1.98633
SRR3384910	fruit	no	20 week after full bloom	2.3465
SRR768128	whole fruit	no	25 days post anthesis	6.55794
SRR768129	whole fruit	no	35 days post anthesis	2.51622
SRR768130	whole fruit	no	60 days post anthesis	2.69123
SRR768131	whole fruit	no	87 days post anthesis	2.73744
SRR7343308	immature fruit flesh	no	immature	9.09283
SRR7343309	immature fruit flesh	no	immature	8.6834
SRR6320494	ripe fruit flesh	no	mature	2.41565
SRR5405143	ripe fruit peel	no	mature	3.55591
SRR6320572	ripe fruit peel	no	mature	2.42831
SRR7403504	fruit	uninfected	mature	2.25877
SRR7403506	fruit	uninfected	mature	2.1744
SRR7403507	fruit	uninfected	mature	1.75923
SRR7403500	fruit	infected with penicillium expansum	mature	2.68356
SRR7403501	fruit	infected with penicillium expansum	mature	2.16583
SRR7403508	fruit	infected with penicillium expansum	mature	2.06499
SRR7403502	fruit	infected with penicillium expansum	mature	1.98594
SRR7403503	fruit	infected with penicillium expansum	mature	2.69655
SRR7403505	fruit	infected with penicillium expansum	mature	2.30659
SRR1613973	Central seeds	no	20DAPF	4.83459
SRR1613974	Central seeds	no	20DAPF	5.12707
SRR1613975	Central seeds	no	20DAPF	4.36307
SRR1613976	Lateral seeds	no	20DAPF	4.4162
SRR1613977	Lateral seeds	no	20DAPF	4.61646
SRR1613978	Lateral seeds	no	20DAPF	5.13606
SRR3744786	stem	no	mature	7.04244
SRR3744787	stem	no	mature	8.01415
SRR3744772	stem	no	mature	7.96381
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.45356
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.49019
SRR1089478	leaf	Virus-free	plantlets	2.65299
SRR1089477	leaf	ASGV-infected	plantlets	3.08684
SRR767660	leaf	uninfected	fully developed	3.07673
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.30218
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.18645
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.96754
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	12.0704
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.18115
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.23699
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.26868
SRR6308182	young leaf	no	immature leaves	7.74426
SRR3744769	leaf	no	mature	8.04886
SRR3744770	leaf	no	mature	7.82069
SRR3744771	leaf	no	mature	8.7202
SRR5405145	leaf	no	mature	7.18506
SRR6320561	leaf	no	mature	7.2183