Gene detail

Detail information of MD09G1060600 Annotation

Gene ID	Annotation
MD09G1060600	Saccharopine dehydrogenase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0865	coatomer subunit zeta katanin p60 ATPase-containing subunit A1 [EC:3.6.4.3] transcription elongation factor SPT4 GTG proton-transporting V-type ATPase TUB

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1060600	mRNA	Chr09	4133841	4136018	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G39410.1	1	Saccharopine dehydrogenase
Prunus persica	Prupe.3G260300.1.p	1	Saccharopine dehydrogenase
Pyrus communis	PCP043771.1	1	-
Pyrus x bretschneideri	Pbr006390.1	1	-
Rosa multiflora	Rmu_sc0002181.1_g000013.1	1	-
Rubus occidentalis	Ro06_G18338	1	-
Fragaria vesca	mrna04360.1	1	Saccharopine dehydrogenase
Vitis vinifera	GSVIVT01011482001	1	Saccharopine dehydrogenase
Solanum lycopersicum	Solyc02g088490.2.1	1	Saccharopine dehydrogenase
Populus trichocarpa	Potri.004G126100.1	1	Saccharopine dehydrogenase
Nicotiana benthamiana	Niben101Scf04763g02020.1	1	Saccharopine dehydrogenase LENGTH=454
Oryza sativa	LOC_Os07g40620.1	1	"saccharopine dehydrogenase, putative, expressed"
Zea mays	GRMZM2G056081_P01	1	Saccharopine dehydrogenase

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	13.0461
SRR5252888	dormant buds	no	dormant buds(0 month)	30.892
SRR5252889	dormant buds	no	dormant buds(0 month)	28.9879
SRR5252886	dormant buds	no	dormant buds(1 months)	20.8749
SRR5252887	dormant buds	no	dormant buds(1 months)	25.9316
SRR5252884	dormant buds	no	dormant buds(2 months)	21.9718
SRR5252882	dormant buds	no	dormant buds(3 months)	20.7674
SRR5252883	dormant buds	no	dormant buds(3 months)	30.6128
SRR5252880	dormant buds	no	dormant buds(4 months)	23.7198
SRR5252881	dormant buds	no	dormant buds(4 months)	22.6855
SRR5252878	bud break	no	bud break	19.7262
SRR5252879	bud break	no	bud break	14.4345
SRR3744766	flower	no	mature	24.4427
SRR3744767	flower	no	mature	26.1698
SRR3744768	flower	no	mature	25.8671
SRR6308190	stigmas	no	open flowers	19.5023
SRR6308181	styles	no	open flowers	16.1403
SRR6308188	filaments	no	open flowers	19.6326
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.78282
SRR6308192	pollen	no	open flowers	2.08241
SRR6308191	petals	no	open flowers	11.3191
SRR6308194	sepals	no	open flowers	14.1045
SRR6308193	receptacles	no	open flowers	22.2623
SRR6308189	ovaries	no	open flowers	20.313
SRR3384922	fruit	no	1 week after full bloom	17.12
SRR3384921	fruit	no	2 week after full bloom	16.7775
SRR3384920	fruit	no	3 week after full bloom	14.67
SRR3384919	fruit	no	4 week after full bloom	14.7893
SRR3384923	fruit	no	5 week after full bloom	16.0543
SRR3384918	fruit	no	6 week after full bloom	12.4851
SRR3384917	fruit	no	8 week after full bloom	13.3009
SRR3384916	fruit	no	10 week after full bloom	13.5965
SRR3384915	fruit	no	12 week after full bloom	15.7521
SRR3384914	fruit	no	14 week after full bloom	13.7062
SRR3384913	fruit	no	16 week after full bloom	14.9313
SRR3384912	fruit	no	18 week after full bloom	16.2279
SRR3384911	fruit	no	19 week after full bloom	16.5408
SRR3384910	fruit	no	20 week after full bloom	20.056
SRR768128	whole fruit	no	25 days post anthesis	14.689
SRR768129	whole fruit	no	35 days post anthesis	13.3471
SRR768130	whole fruit	no	60 days post anthesis	17.591
SRR768131	whole fruit	no	87 days post anthesis	13.0608
SRR7343308	immature fruit flesh	no	immature	12.7628
SRR7343309	immature fruit flesh	no	immature	13.0545
SRR6320494	ripe fruit flesh	no	mature	26.5473
SRR5405143	ripe fruit peel	no	mature	26.0079
SRR6320572	ripe fruit peel	no	mature	42.5889
SRR7403504	fruit	uninfected	mature	24.9468
SRR7403506	fruit	uninfected	mature	25.054
SRR7403507	fruit	uninfected	mature	26.1747
SRR7403500	fruit	infected with penicillium expansum	mature	19.9939
SRR7403501	fruit	infected with penicillium expansum	mature	21.0453
SRR7403508	fruit	infected with penicillium expansum	mature	23.1302
SRR7403502	fruit	infected with penicillium expansum	mature	20.7032
SRR7403503	fruit	infected with penicillium expansum	mature	21.4057
SRR7403505	fruit	infected with penicillium expansum	mature	23.1022
SRR1613973	Central seeds	no	20DAPF	19.9976
SRR1613974	Central seeds	no	20DAPF	19.0196
SRR1613975	Central seeds	no	20DAPF	21.7939
SRR1613976	Lateral seeds	no	20DAPF	20.2051
SRR1613977	Lateral seeds	no	20DAPF	19.5562
SRR1613978	Lateral seeds	no	20DAPF	18.4661
SRR3744786	stem	no	mature	42.7172
SRR3744787	stem	no	mature	42.5335
SRR3744772	stem	no	mature	42.0296
SRX765691	seedling shoot apex	no	4-6 week old seedling	14.3784
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.1932
SRR1089478	leaf	Virus-free	plantlets	26.0517
SRR1089477	leaf	ASGV-infected	plantlets	25.2802
SRR767660	leaf	uninfected	fully developed	16.7391
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	26.5137
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	15.2995
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	19.0399
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	7.90845
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.7783
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	26.1117
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	18.5242
SRR6308182	young leaf	no	immature leaves	9.51227
SRR3744769	leaf	no	mature	34.9426
SRR3744770	leaf	no	mature	32.2421
SRR3744771	leaf	no	mature	33.9935
SRR5405145	leaf	no	mature	11.0882
SRR6320561	leaf	no	mature	8.5673