| Gene ID | Annotation |
|---|---|
| MD09G1180900 | lipoxygenase 3 |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0265 | intracellular signal transduction respiratory burst involved in defense response response to chitin abscisic acid-activated signaling pathway ethylene biosynthetic process ethylene-activated signaling pathway response to water deprivation hyperosmotic salinity response transcription factor activity jasmonic acid biosynthetic process response to wounding sequence-specific DNA binding response to fungus endoplasmic reticulum unfolded protein response stamen filament development response to mechanical stimulus jasmonic acid mediated signaling pathway protein autoubiquitination lipid oxidation lipoxygenase [EC:1.13.11.12] |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD09G1180900 | mRNA | Chr09 | 15546939 | 15551560 | + |
| CDS: |
| MD09G1180900 |
| Protein: |
| MD09G1180900 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G17420.1 | 1 | ATLOX3;LOX3|Arabidopsis thaliana lipoxygenase 3;lipoxygenase 3 |
| Pyrus communis | PCP012252.1 | 1 | - |
| Rubus occidentalis | Ro06_G19057 | 1 | - |
| Fragaria vesca | mrna05306.1 | 1 | PLAT/LH2 domain-containing lipoxygenase family protein |
| Vitis vinifera | GSVIVT01016738001 | 1 | lipoxygenase 3 |
| Solanum lycopersicum | Solyc03g122340.2.1 | 1 | lipoxygenase 3 |
| Populus trichocarpa | Potri.001G167700.1 | 1 | lipoxygenase 3 |
| Nicotiana benthamiana | Niben101Scf02749g01001.1 | 1 | lipoxygenase 3 LENGTH=919 |
| Nicotiana benthamiana | Niben101Scf07767g02004.1 | 0.845 | lipoxygenase 3 LENGTH=919 |
| Oryza sativa | LOC_Os03g08220.1 | 1 | "lipoxygenase protein, putative, expressed" |
| Zea mays | GRMZM2G017616_P01 | 1 | Lipoxygenase |
| GO term | Description | Category |
|---|---|---|
| GO:0005515 | protein binding | molecular_function |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016165 | linoleate 13S-lipoxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| KO | Description | Enzyme |
|---|---|---|
| K00454 | lipoxygenase | EC:1.13.11.12 |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01477.19 | PLAT | 141 | 209 | 1.40E-09 |
| PF00305.15 | Lipoxygenase | 222 | 888 | 5.90E-298 |
 |