Gene detail

Detail information of MD09G1246900 Annotation

Gene ID	Annotation
MD09G1246900	Glycosyl hydrolase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0343

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1246900	mRNA	Chr09	31624224	31630330	+

Sequences

CDS:

MD09G1246900

TGTGAGCATATAACATTACTTCCTTTTGACCCTTTTTCTTTTTGTAAATTGGAGTTGTTTTCATATTTTTATGAGTAGGTGAGACTGAAATTGAACAAGACAAACTTGTTCAGGGAAAGATTAAAATTCAAGAAAAGCAGTGAAATCAGGTATCTCAGAATCTCAGATCTAAACAGAACACAACCAGGCGGCAAACAGCTTGATACCAACACTGCAACCACACCACACACCCACCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCTTCCATTGATAATATTTCTCCATTTTTGACTATTGCTTTCTTGGTTGAACATGTTAGCTCTGATTTCTCTGCCATATTCCCCACATGCCCTCAGACCTTCCTCCACCCTTGTTGCATAAAACTTTCCTTTTTCTCCTTTTCCACTTATATATCAGGACACCAGTATACATTTTTTACTACAGAAAGATCTGGGTGTTCATATCTCGGGTCTGAGGATCATAATCTCATCTGGGTACCAATAATTTCAGGATTTTGTTGAAATTTAGCCAAAAGGGTGTCAAAAAATTCTTCAAATCTGCCCAAAATTTGGGGCTTTTTATGATCTTAAGGTACTCTGCAAAGAAGAAGAAAATGGTAGTGGCAGGAAATGGTCTGTTCTACCCAATTCTCGGATTCGTGTCCTGTGTGGCCTTCATCTACTTGTCTTTCGGTAACTTGGGTTCTAATGTTAGCGACGAAAAGAAGTTGAGTTTTGTGGGGAGGAATGGGGCTCAGTTCATGTTGGATGGCAAGGCATTTTACATTAATGGGTGGAATTCTTACTGGTTGATGGATCAAAGTGTGGATGAGTATAGAAAGCCGAGGGTCCGGAAAATTCTGCAAGCCGGTGCGAAAATGGGCCTTACTGTCTGCCGGACTTGGGCGTTTAACGACGGCGAGTACAATGCCCTCCAGATTTCCCCTGGTCACTTCAATGAGGAAGTGTTCAAGGCTTTGGATCATGTCATTGTAGAAGCTAGACAACAGGGCATCAGGCTGCTCCTTTGCTTAGTTAATAACTTGCAAGCATATGGCGGGAAGACTCAGTATGTAAAGTGGGCTTGGGAAGAAGGTGTTGGTTTGAGCGCTTCCAATGATTCCTTTTTCTTCGATCCATCTATTCGCAATTATTTCAAGAACTATGTCAAGACTATCCTAACAAGGAAGAATACGCTCAATGGAATTGAGTATAGAAATGATCCTACCATTTTCGCGTGGGAATTAATAAATGAACCTCGTTGCATAACTGATGCTTCAGGCGACACTCTCCAAGATTGGATAGAAGAAATGTCAGCTTTTGTGAAAGCAATTGACAAGAACCACCTACTGACCGTGGGCCTTGAAGGATTTTATGGTCCAAAAAGCCCTAAAAGGTTGACTGCAAATCCGGAAATGTGGGCATCCAGACTTGGATCAGATTTTATTCGCAACTCCAAGATCCCCAATATTGATTTCGCCTCTGTTCATATCTACCCTGACCATTGGTTCCATGATGAAGAATTTCACGAGAACCTCAAATTTGTCTCCAAGTGGATGCGTTCTCACATTGAAGACGGGAACAATGAACTGAATAAACCTGTCATGTTCACCGAGTATGGATTGTCAAACCAGAACAAGGACTTTGAACCATCTCAGCGTGAGAGGTTTTACAAAACTATTTTAGACGTGATATACAAATCTGCCAAGAAAAACCGGTCTGGAGCAGGTGCTTTAGCCTGGCAGTTTCTCGTTGAAGGAATGGACGAGTATAATGATGAATTTGGGATTGTTCCGTGGAAAAGACCGTCTGAGTATAAGATAATAGTAGAACAATCATGCAGGTTGGCTAGACTCAAGGGACCAACTCAACAACAGCGAAATTTGAAAGACTTGTGTTCGCAAAGAAAGTGAAATGCTTATTTTTTGTCCGCAGAAAAATTCAATTCCTTGGGAGGGTTGGGGTTATATATTTACGGTTTGACGGTGCTTAAAGGAGAGATGCAGGTTCGACTGTGTACTATATTCTTCCCACAGCATATGGAAGATGTAATTTCATCTTGAATGAATTGTAAGTTATAGAAAAAGTTATAATTGTGATGTTATCGAAAGCTTTACGTGATGAAAGACTACAGATTAACAGCCAAAAGAAGTCTTTTGAACTATTGATTAGGTTGCTTTGCTTGTAAGAAATGGTATCTGCAGTCCTGAAACTGTGCTTTAAAGCACTGGATAGGTCTGATAGCTCTCTATGAAAACTCTAGTTCTCTTGTAATGATATCTACAGACTACCGCGGTCTTGATTTTTATCCAACCGCTTTCGTTCTGGT

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH5

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G20680.1	1	AtMAN2;MAN2\|endo-beta-mannase 2
Pyrus communis	PCP028467.1	1	-
Pyrus x bretschneideri	Pbr032650.1	1	-
Pyrus x bretschneideri	Pbr032647.1	1	-
Rosa multiflora	Rmu_sc0002369.1_g000020.1	1	-
Rubus occidentalis	Ro06_G14166	1	-
Fragaria vesca	mrna17714.1	1	Glycosyl hydrolase superfamily protein
Vitis vinifera	GSVIVT01020553001	1	Glycosyl hydrolase superfamily protein
Solanum lycopersicum	Solyc07g053920.2.1	1	Glycosyl hydrolase superfamily protein
Populus trichocarpa	Potri.013G130400.1	1	Glycosyl hydrolase superfamily protein
Nicotiana benthamiana	Niben101Scf02297g07004.1	1	"Mannan endo-1,4-beta-mannosidase 2"
Nicotiana benthamiana	Niben101Scf04992g03008.1	0.945	"Mannan endo-1,4-beta-mannosidase 2"
Oryza sativa	LOC_Os01g54300.1	1	OsMan02 - Endo-Beta-Mannanase
Oryza sativa	LOC_Os06g20620.1	1	"OsMan07 - Endo-Beta-Mannanase, expressed"
Zea mays	GRMZM2G140201_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005975	carbohydrate metabolic process	biological_process
GO:0003824	catalytic activity	molecular_function

KEGG

KO	Description	Enzyme
K19355	"mannan endo-1,4-beta-mannosidase"	EC:3.2.1.78

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00150.14	Cellulase	67	388	7.90E-15

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.46215
SRR5252888	dormant buds	no	dormant buds(0 month)	12.3608
SRR5252889	dormant buds	no	dormant buds(0 month)	11.8325
SRR5252886	dormant buds	no	dormant buds(1 months)	9.94019
SRR5252887	dormant buds	no	dormant buds(1 months)	14.0704
SRR5252884	dormant buds	no	dormant buds(2 months)	9.70482
SRR5252882	dormant buds	no	dormant buds(3 months)	8.83494
SRR5252883	dormant buds	no	dormant buds(3 months)	7.098
SRR5252880	dormant buds	no	dormant buds(4 months)	7.92066
SRR5252881	dormant buds	no	dormant buds(4 months)	6.05459
SRR5252878	bud break	no	bud break	11.8338
SRR5252879	bud break	no	bud break	9.36726
SRR3744766	flower	no	mature	3.04924
SRR3744767	flower	no	mature	3.24907
SRR3744768	flower	no	mature	3.14534
SRR6308190	stigmas	no	open flowers	7.35526
SRR6308181	styles	no	open flowers	7.92749
SRR6308188	filaments	no	open flowers	9.26173
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.97489
SRR6308192	pollen	no	open flowers	1.35804
SRR6308191	petals	no	open flowers	5.94357
SRR6308194	sepals	no	open flowers	3.96776
SRR6308193	receptacles	no	open flowers	4.38959
SRR6308189	ovaries	no	open flowers	9.08762
SRR3384922	fruit	no	1 week after full bloom	4.87123
SRR3384921	fruit	no	2 week after full bloom	5.2728
SRR3384920	fruit	no	3 week after full bloom	4.00817
SRR3384919	fruit	no	4 week after full bloom	7.28248
SRR3384923	fruit	no	5 week after full bloom	6.89623
SRR3384918	fruit	no	6 week after full bloom	7.80759
SRR3384917	fruit	no	8 week after full bloom	5.37668
SRR3384916	fruit	no	10 week after full bloom	8.0876
SRR3384915	fruit	no	12 week after full bloom	7.75682
SRR3384914	fruit	no	14 week after full bloom	8.61279
SRR3384913	fruit	no	16 week after full bloom	9.52334
SRR3384912	fruit	no	18 week after full bloom	9.59774
SRR3384911	fruit	no	19 week after full bloom	6.67109
SRR3384910	fruit	no	20 week after full bloom	7.12
SRR768128	whole fruit	no	25 days post anthesis	5.36475
SRR768129	whole fruit	no	35 days post anthesis	5.33463
SRR768130	whole fruit	no	60 days post anthesis	9.02179
SRR768131	whole fruit	no	87 days post anthesis	13.0547
SRR7343308	immature fruit flesh	no	immature	5.79374
SRR7343309	immature fruit flesh	no	immature	6.60465
SRR6320494	ripe fruit flesh	no	mature	6.15816
SRR5405143	ripe fruit peel	no	mature	4.26529
SRR6320572	ripe fruit peel	no	mature	1.72974
SRR7403504	fruit	uninfected	mature	3.68148
SRR7403506	fruit	uninfected	mature	3.9301
SRR7403507	fruit	uninfected	mature	4.39758
SRR7403500	fruit	infected with penicillium expansum	mature	6.39365
SRR7403501	fruit	infected with penicillium expansum	mature	6.12614
SRR7403508	fruit	infected with penicillium expansum	mature	7.10914
SRR7403502	fruit	infected with penicillium expansum	mature	7.49509
SRR7403503	fruit	infected with penicillium expansum	mature	7.1157
SRR7403505	fruit	infected with penicillium expansum	mature	7.23226
SRR1613973	Central seeds	no	20DAPF	9.59318
SRR1613974	Central seeds	no	20DAPF	9.39991
SRR1613975	Central seeds	no	20DAPF	7.55931
SRR1613976	Lateral seeds	no	20DAPF	7.91541
SRR1613977	Lateral seeds	no	20DAPF	7.32877
SRR1613978	Lateral seeds	no	20DAPF	7.75697
SRR3744786	stem	no	mature	3.05698
SRR3744787	stem	no	mature	2.67499
SRR3744772	stem	no	mature	2.66803
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.87326
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.79564
SRR1089478	leaf	Virus-free	plantlets	3.57922
SRR1089477	leaf	ASGV-infected	plantlets	3.19544
SRR767660	leaf	uninfected	fully developed	5.13945
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.36873
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.26336
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.65537
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	16.3404
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.03682
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.37984
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.54286
SRR6308182	young leaf	no	immature leaves	6.56003
SRR3744769	leaf	no	mature	2.55483
SRR3744770	leaf	no	mature	2.6821
SRR3744771	leaf	no	mature	2.90941
SRR5405145	leaf	no	mature	3.1213
SRR6320561	leaf	no	mature	7.89252