Gene detail

Detail information of MD10G1232500 Annotation

Gene ID	Annotation
MD10G1232500	alpha 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0566	translation initiation factor 5 cystathionine gamma-synthase [EC:2.5.1.48] sterol 3beta-glucosyltransferase [EC:2.4.1.173] cystathionine gamma-synthase activity beta-sitosterol UDP-glucosyltransferase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1232500	mRNA	Chr10	32891206	32896761	+

Sequences

CDS:

MD10G1232500

GAATCGGAGGATTCTTTTCCAGATTTTTTAACATTCCCCTTGACTGTATCACTGAAGACACTCACCTATCTCTCTCTTGTCTCACTGCCCACTTCCGATGACACCCGATTCCGTTAACTCCAAACGGCCCCAAAATGCTGAGAAGTATTCGATCCCGGCGGCCCCACCGACCGCGTTACGGCGTTTACATCTGCGCCGTTATCTCCGCTCTCCTCCTCCTCCTCTCCGTCTCTCTCCTCTACACTCGCCTTTCTCACTCCCAATCTCACCACTTCCACTACCGTCACCAGAACCCCGATTCCCAATACGACGACGTTTCTCTCACCAACCCCCTCGTCTCCGATGAGGGCAACGACGTCGGCTCCATCGCCACCGAGGACAAGATCGACGAGCTCGACGACGTCGTAGAGGAGACACCCAAAGACGAGGAAGTGGACGATGAGGACGACCCCCAATCGGAGATTTCGCAATCTAGGGTTTCCGGTTATGTATTCGATCACGTGACTGGGGTTATCAGGAGGGGTTTCATTAAGCGTAAAATTGAGGATTGGGAGGAGGATTACAATGGGTTTAACATGGGATTGGGTGCATTGGATAAGAGCAAGGTGGCGTTCGGATCGGACGATGTGCCGGTGGATATGGAGGTGCGGCGGAGGATGAGTGAGGTGGCGGGTATTGAGGACGCGCTATTGCTGAAGGTGGGGAAGAGGGTTTCGCCGCTAAGGGAGGGGTGGGGGGAGTGGTTTGACAAGAAAGGCGATTTCCTGAGGAGGGATAGGATGTTTAAGTCCAATGTGGAGAAGCTGAATCCGTTGCACAATCCAATGCTGCAGGACCCTGATGCGGTTGGGGTTACTGGGTTGACAAAGGGTGATAAGGTGCTGCAGAAATGGTGGCTGAATCACTTTAAGAAGGTCCCGTTTCTCGGGAAGAAGCCGCTGGGAGTTTCGGGGAGGCCCCGAGAAGTGAAGCTCCGGGAAAATGGCCGCGAGGGTAGGAAAATGGAGAGTGATGGTGGAGATGGTGTTGTGAATGGAAGGGGAAATGGAATAGGTGTAGGAACAGAAGTTGCTGAAAATGAGAGTAAGGGTTTGAATTCAGGTTCAAGTGGTAATTCTAGTACCGACAGGAATTTGTCTTACATGAGTAATGTGAGTGATAAAGCGATTGGGAACACCGTTGAACAAATTAGTGAGTCGGATCCGGATCAAGTGGGTGGCTTTAAGGATGAGTTTTCAGGTGTGATATATGCAGATGGCAAGAGATGGGGTTACTATCCCGGTTTGGACCCGCTTTTATCATTCTCTGATTTTGTGGATGTGTTTTTCAGGAAGGGGAAATGTGAGATGAGGGTTTTTATGGTGTGGAATTCTCCCCCTTGGATGTATACTGTAAGACAGCAGCGGGGACTTGAGAGTTTACTATCCCGTCATCGAGATGCCTGTGTTTTGGTGTTGTCTGAGACAATTGAGCTTGATTTCTTTAAAAATAACTTTTTGAAGGACGGTTACAAAGTTGCTGTTGCTATGCCAAATCTTGATGAATTACTAAGGGATACACCGACCCATATATTTGCTTCTGCCTGGTCCGAGTGGAGAAAGACCAAGTATTATGCTACTCATTACAGTGAGCTCGTCCGCCTTGCTGCTCTCTACAAATACGGAGGAATATATCTTGATTCTGATATCATAGTTCTGAAGCCTTTATCATCACTTCACAATTCTGTTGGTAAAGAGGATCAACCTGCGGGAAGTTCTTTGAATGGTGCTGTAATGGCATTTAATAGGAGGAGCCCCTTCATAATGGAGTGCCTGAAAGAGTTTTATATGACATATGATGATACTCGTTTGAGATTGAATGGGGCTGATCTTTTGACAAGAGTTGCACGAAGGTTTTTGAGTAGTCGTAATAAATCAGTTAGACAGCTGGAGCTGAAAGTGCAGCCTTCTTTCATATTTTTTCCAATTGCTTCTCAGAATATCTCAAGATACTTCACTGCACCGTCAACAGAGACTGAAAAGGCTCAACAAGATGCCCTGTTCAGAAAGATTCTAGATGAGTCGTTAACATTCCATTTTTGGAACAGCTTGACCTCTGCTCTCATTCCAGAGCCAGAGAGCCTTGCTACCAGACTTATTGACCACCCTTGTATCCGATGCACTGATGTGTTGTGAGTTAACATAATTCCTCTGGTTGGTTGGTACCGAACGGGCCAATAACACTGAAGCTTATCAAGTTTTCACTTCCTGTCAATAATTAAAAGATAAGTGCAAGCCCGTTCGTGTAGCTGTAAGATCGTGTATCTTCTCTGTATGCTCATGAAAAGACGGAGTTCTTTTCTTTGTGAAATGCTGGTAGAAGCTCTGTTGTATTTGGAAGTTATTTTTTCGATCTAGCTAGTTTCTGAGGTGGCTCTTGTTGTTTAATCACTAGTCTGTGCCATTCTTCTTCCGAGTATCACGGGTGAAAGGTTTTGAATTCTACGTTGGTTCGGCCAACGTTTCAGGTTTCAGCTGTAGTGAAGAAACTATTTGTTACTAGTTTACATGGAAATATAGAAAGATGTCTGATTCTTTGTTATATATGCCCTCTCTCTCTCTTTCTCTCTCCAGAATGTACATAATATTATTTATT

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT32

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G19900.1	1	"alpha 1,4-glycosyltransferase family protein"
Prunus persica	Prupe.4G112000.1.p	1	"alpha 1,4-glycosyltransferase family protein"
Pyrus x bretschneideri	Pbr021437.1	1	-
Rosa multiflora	Rmu_sc0009586.1_g000002.1	1	-
Rubus occidentalis	Ro03_G10842	1	-
Fragaria vesca	mrna20037.1	1	"alpha 1,4-glycosyltransferase family protein"
Solanum lycopersicum	Solyc02g068790.2.1	1	"alpha 1,4-glycosyltransferase family protein"
Populus trichocarpa	Potri.015G122200.1	1	"alpha 1,4-glycosyltransferase family protein"
Nicotiana benthamiana	Niben101Scf09209g02008.1	1	"alpha 1,4-glycosyltransferase family protein LENGTH=644"
Nicotiana benthamiana	Niben101Scf01177g05009.1	0.916	Lactosylceramide 4-alpha-galactosyltransferase
Oryza sativa	LOC_Os07g37990.1	1	"glycosyltransferase sugar-binding region containing DXD motif, putative, expressed"
Zea mays	GRMZM5G897546_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0008378	galactosyltransferase activity	molecular_function
GO:0005795	Golgi stack	cellular component

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.60863
SRR5252888	dormant buds	no	dormant buds(0 month)	6.21974
SRR5252889	dormant buds	no	dormant buds(0 month)	6.92267
SRR5252886	dormant buds	no	dormant buds(1 months)	6.27427
SRR5252887	dormant buds	no	dormant buds(1 months)	4.11625
SRR5252884	dormant buds	no	dormant buds(2 months)	4.47008
SRR5252882	dormant buds	no	dormant buds(3 months)	6.52708
SRR5252883	dormant buds	no	dormant buds(3 months)	3.23289
SRR5252880	dormant buds	no	dormant buds(4 months)	8.88283
SRR5252881	dormant buds	no	dormant buds(4 months)	7.30339
SRR5252878	bud break	no	bud break	7.60235
SRR5252879	bud break	no	bud break	5.48689
SRR3744766	flower	no	mature	3.50126
SRR3744767	flower	no	mature	3.78721
SRR3744768	flower	no	mature	3.81398
SRR6308190	stigmas	no	open flowers	6.01139
SRR6308181	styles	no	open flowers	5.13068
SRR6308188	filaments	no	open flowers	4.89941
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.30595
SRR6308192	pollen	no	open flowers	3.1924
SRR6308191	petals	no	open flowers	2.73735
SRR6308194	sepals	no	open flowers	3.10407
SRR6308193	receptacles	no	open flowers	3.91624
SRR6308189	ovaries	no	open flowers	5.48988
SRR3384922	fruit	no	1 week after full bloom	2.77729
SRR3384921	fruit	no	2 week after full bloom	4.07513
SRR3384920	fruit	no	3 week after full bloom	3.58822
SRR3384919	fruit	no	4 week after full bloom	4.75511
SRR3384923	fruit	no	5 week after full bloom	4.70295
SRR3384918	fruit	no	6 week after full bloom	5.12029
SRR3384917	fruit	no	8 week after full bloom	4.23608
SRR3384916	fruit	no	10 week after full bloom	5.04444
SRR3384915	fruit	no	12 week after full bloom	5.64935
SRR3384914	fruit	no	14 week after full bloom	3.96226
SRR3384913	fruit	no	16 week after full bloom	4.33874
SRR3384912	fruit	no	18 week after full bloom	4.68757
SRR3384911	fruit	no	19 week after full bloom	3.70832
SRR3384910	fruit	no	20 week after full bloom	6.62926
SRR768128	whole fruit	no	25 days post anthesis	6.17674
SRR768129	whole fruit	no	35 days post anthesis	4.00441
SRR768130	whole fruit	no	60 days post anthesis	6.71377
SRR768131	whole fruit	no	87 days post anthesis	8.30219
SRR7343308	immature fruit flesh	no	immature	6.37626
SRR7343309	immature fruit flesh	no	immature	5.45099
SRR6320494	ripe fruit flesh	no	mature	6.47676
SRR5405143	ripe fruit peel	no	mature	5.68105
SRR6320572	ripe fruit peel	no	mature	9.45944
SRR7403504	fruit	uninfected	mature	4.73514
SRR7403506	fruit	uninfected	mature	4.40392
SRR7403507	fruit	uninfected	mature	4.79854
SRR7403500	fruit	infected with penicillium expansum	mature	0.133024
SRR7403501	fruit	infected with penicillium expansum	mature	0.197404
SRR7403508	fruit	infected with penicillium expansum	mature	0.189743
SRR7403502	fruit	infected with penicillium expansum	mature	0.440097
SRR7403503	fruit	infected with penicillium expansum	mature	0.655404
SRR7403505	fruit	infected with penicillium expansum	mature	0.515488
SRR1613973	Central seeds	no	20DAPF	2.88209
SRR1613974	Central seeds	no	20DAPF	3.10971
SRR1613975	Central seeds	no	20DAPF	2.27467
SRR1613976	Lateral seeds	no	20DAPF	2.46063
SRR1613977	Lateral seeds	no	20DAPF	2.34519
SRR1613978	Lateral seeds	no	20DAPF	2.94629
SRR3744786	stem	no	mature	4.6713
SRR3744787	stem	no	mature	4.85583
SRR3744772	stem	no	mature	4.8432
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.38787
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.87306
SRR1089478	leaf	Virus-free	plantlets	4.16509
SRR1089477	leaf	ASGV-infected	plantlets	3.69236
SRR767660	leaf	uninfected	fully developed	1.63031
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.84918
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.779907
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.992
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.66593
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.77049
SRR6308182	young leaf	no	immature leaves	3.44114
SRR3744769	leaf	no	mature	4.2916
SRR3744770	leaf	no	mature	4.89546
SRR3744771	leaf	no	mature	4.60717
SRR5405145	leaf	no	mature	4.7581
SRR6320561	leaf	no	mature	4.84671