Gene detail

Detail information of MD11G1105600 Annotation

Gene ID	Annotation
MD11G1105600	Leucine-rich repeat protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0187	Leucine Rich Repeat Kinase XI & XII cellular response to nitrogen starvation regulation of defense response oligopeptide transport protein phosphorylation systemic acquired resistance protein tyrosine kinase activity ATP binding plasmodesma transmembrane receptor protein tyrosine kinase signaling pathway

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1105600	mRNA	Chr11	9009843	9016116	+

Sequences

CDS:

MD11G1105600

ATGGAGAGAGGCCAACCTGCTGCGCCGAGCAGCTTAGAGATAAAGGTGGTGAGTCCACGGCGGAGCGACAACGTTGTGCACCCGGCGGGACAGCCTCCGGAGACCACGACGCCGCGGCGGTCGTTCAGCGACTACAGCCCGTTGAAGAGGTGGGTGTCATGGCTGGTGTCGTCGATTGTGGTGGCCAACATTGTGGTTTTTGTGGTGACCATGTTCGTGAACGATTGCCCCAAGAACTCCGACACTTGCATTGGTCGGTTCCTCGGCCGCCTCTCCTTTCAGCCCTTCAAGGAAAACCACGTTAGAAAAGATGGGTGCTCTAGACGTTCAGAGAGTGGTTCATCGACACTAGGGATGGCGGCTGATCTCATGTATGTGTTCGAATTGGTTTCCTATATTCTCATGTCTGGTTTTGGTGGGAGTTTGCTTTCAGCTCTTTTTATTCAATATGGTATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTCGGAAGCATGCTTTCAGAGCTCATATCAAATTGGACAATGTATGTAAATAAGAAACTGTGGTGGTTTGTTTGCTGTAGGAGCTCCCTGCAATCGGGACTCGGAGGGAACGCAACGGATAGGCTGGCGCTGCTTGCCATCAAAGATCTTCATAATTACAACGTGATGAGCTCCTGGAACGAATCCACGCACTTTTGCATGTGGCATGGTGTGACGTGCAGTCGACGACATCACCAAAGGGTCACTACCCTACACCCGCAATCTCAAAATCTGGTAGGGAAACTATCCCCAAACATTGGAAATCTAAGTTTTCTAAGGGAACTGTGGCTGCGAAATAACAGCTTCAGTCATGCAATTCCTCCACAAATTGGGAATTTGCGTAGGTTGCAGGTATTGCGATTAGACGTTAACTCGTTTAGTGCCAGTATTCCACACAATATATCATATTGCTTCAACCTTATCCATGTGAATTTCAGTCGCAACAAGTTGGTGGGTAAAATTCCTTCAGAAATTGGATTGCTGTTGAAGCTACAAAAGTTTACATTAGAAACTAATAATGTAACGGGACCGGTCCCTCCTTCCTTGGGGAACCTTTCGTCTCTCCAGGTACTGGTTCTTAGTCGTAATCACTTGATGGGAAACATCCCCAGTTCTCTTGGCCAATTGAAAAAATTAACCTTCTTGGGATTGGGGTTAAATAAGTTGTCGGGTAGCATCCCTTCCTCCATTTATAACCTCTCTTCTCTTGTTACATTTTTCATGGCATTTAACGAAATTCAAGGGAGTATTCCATCAGATATTGGCAAAAGTATTCCTAATCTCGGAGTCTTCAGCGTCGCCTCAAACCTACTTACTGGGTCCATACCTCCCGCAATATTCAATGTCACAAGTGTGCGGGCTTTTGAAGTTGGGGATAACAACCTAATCGGACAGGTACCGAATCTCCAAAAGCTTTACAACCTCCAGCGGTTCAACGTTGAACTTAATAATATTGGAAGCGGTAAAGATGGTGACTTAAGTTTTCTCTCGGACTTGACCAATGCCACCCAGTTACAATGGTTGATTATAAGCAACAACAATTTTGGAGGGACATTGCCCATGTCAATATCCAATCTCTCAACCAAACTAGATACGTTTTGGGTGCACCTTAACCAAATATGTGGAAGCATCCCATCTGGGATAGGGAATCTGGTGAGCTTGCAATCGTTGGATTTGGGGAATAATAACTTCACAGGTAACATCCCCTCTGACATGGGTAAGCTTTCAAACCTTGGAGCATTAGAAATTTTCATGAACAAATTATCAGGAAATATTCCACTTTCCTTAGGAAATTTAACCAAGTTATTCTATCTTCGGTTGGATGGAAATTATCTTGAGGGCAGCATTCCTTCAGGTCTGGGGGAATGCCATGGGTTGCAATTGTTGGATCTTTCTTATAACCTCCTAAATGGCACAATACCCAAACAAGTTTTTAGACTCCCCTCCTTATCGATTGCTTTGGAATTGTCTAATAACCTCTTCACAGGTTCCCTTCCCCCGGAGGTTGGGAATTTCCAGAGTCTAAGTGAGCTTTATCTTTCTGATAACATGCTATCTGGAGAACTCCCCAGTAGCCTTGGTGGTTGTGAGAGTTTAGAAGTCCTGCATTTGCAAGGAAACTTCTTCAATGGGTCCATTCCTTTGTCTATGAGTTCAGTGAGAGGGATTCGAGATCTAGACCTTTCTCGCAATAATTTTTCAGGGGAAATTCCAAAATTTTTAGAAGGTTTTAGATTCCTGAATAATCTGAACTTATCATTCAATCAATTTTGGGGAATGGTACCTACTGGAGGTGTTTTCAAAAATGCGAGTGCTATTTCAATTGTTGGCAACACTAATCTGTGCAGCCCTGTTGCTAATTTAAAGCTTCCCAAGTGCAAGTCTAATGAGACCAAGAAACGAAGATTGTCTCGTAGCTTCAAACTAATACTCCCTTTAGTATTTGGACTTAGTCTTCTAGGAATAGCCATGGTGTTCTTCTATTTCTTTCTTTGTTCGTCAAGGAAGAAAAAGAAAGAAATTTCATTGAGCACTTTGGGGAACACTATCTTGCAAGTGTCATATGCTACTCTACTCGAGGCTACTGACGGGTTCTCAGAGGCTAATTTAATTGGTGCTGGTAGTTTTGGGTCTGTGTACAAAGGAGTTCTTGATGAGGATGATAAAGCTCAACTTGTTGCCGTGAAGGTGTTTAACTTGTTACGCCATGGAGGTTCGAAGAGTTTCATAGCCGAATGTGAAGCTTTGAGAAATATTAGGCATCGAAATCTTGTCAAGATTATAACTGTGTGTTCAAGTGTTGATTTTCATGGTAATGATTTCAAGGCTCTAGTTTATGAGTTCATGAACAACGGGAGCTTAGAGGAGTGGCTGCATCCACCTACTGGAACTGAAGAGTTAAGAGATCATATACCCAAGAAGTTAAGTCTTCTTCAGAGGCTAGAAATTGCCATTGGTGTTGCTTGTGCACTGGATTATCTTCATAATCATTGTGAAACGCCAATAGTTCATTGTGATCTCAAGCCAAGCAACGTTCTCTTGGACAACGAATTAACTGGCCATGTTTCTGACTTTGGATTAGCAAGATTTCTCTCACAAGTAACGAGTAATGTTTCAGCAATTCAGAGTCAGACAAGTTCCGCTGGAATAAGAGGAACGGTTGGTTATGCAGCTCCAGAGTATGGCATGGGGAGTGAGGTGTCGACGAATGGTGATGTCTACAGCTTTGGCATTCTCTTGTTGGAGATGTTTACAGGGAAGAGACCCACCGACAACATGTTTGGTGATAGCTTGAACCTTCATAATTTTGTCAAGATGGCTCTCCCCGGGCAAGTTACTGAGATTGCAGATGCACCACTTCTTCAAGGAGGCACGAACGAGAATCCCAATCAATGCAACATGAGAATTCATAAAGTTGAGGTGTGCTTGAGTTCAATATTTAGAATTGGAATTGCTTGTTCTGCTGAATCCGCAACAGATCGACTAAAGAATATCAATTATGCTGCATCTGAACTTCATTCCATTAGGAATACTTTTCTTGGATAG

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.12.4

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G075300.1.p	1	Leucine-rich repeat protein kinase family protein
Prunus persica	Prupe.6G075000.1.p	1	Leucine-rich repeat protein kinase family protein
Pyrus communis	PCP023192.1	1	-
Pyrus x bretschneideri	Pbr018962.1	1	-
Rosa multiflora	Rmu_ssc0000007.1_g000015.1	1	-
Rubus occidentalis	Ro07_G34010	1	-
Fragaria vesca	mrna19276.1	1	Leucine-rich repeat protein kinase family protein
Vitis vinifera	GSVIVT01038699001	1	Leucine-rich repeat protein kinase family protein
Oryza sativa	LOC_Os06g38760.1	1	"retrotransposon protein, putative, unclassified"
Oryza sativa	LOC_Os02g12450.1	1	"receptor-like protein kinase 2 precursor, putative"

Gene Ontology

GO term	Description	Category
GO:0004252	serine-type endopeptidase activity	molecular_function
GO:0016021	integral component of membrane	cellular component
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	875	1115	1.70E-39

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.261187
SRR5252888	dormant buds	no	dormant buds(0 month)	0.461269
SRR5252889	dormant buds	no	dormant buds(0 month)	0.330791
SRR5252886	dormant buds	no	dormant buds(1 months)	0.11161
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0889643
SRR5252884	dormant buds	no	dormant buds(2 months)	0.142076
SRR5252882	dormant buds	no	dormant buds(3 months)	0.189993
SRR5252883	dormant buds	no	dormant buds(3 months)	0.284665
SRR5252880	dormant buds	no	dormant buds(4 months)	0.0948071
SRR5252881	dormant buds	no	dormant buds(4 months)	0.105232
SRR5252878	bud break	no	bud break	0.283292
SRR5252879	bud break	no	bud break	0.31414
SRR3744766	flower	no	mature	0.4419
SRR3744767	flower	no	mature	0.540032
SRR3744768	flower	no	mature	0.479562
SRR6308190	stigmas	no	open flowers	0.190504
SRR6308181	styles	no	open flowers	0.459521
SRR6308188	filaments	no	open flowers	0.393193
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.15254
SRR6308192	pollen	no	open flowers	0.864407
SRR6308191	petals	no	open flowers	0.252552
SRR6308194	sepals	no	open flowers	0.20393
SRR6308193	receptacles	no	open flowers	0.357853
SRR6308189	ovaries	no	open flowers	1.00531
SRR3384922	fruit	no	1 week after full bloom	0.311233
SRR3384921	fruit	no	2 week after full bloom	0.360954
SRR3384920	fruit	no	3 week after full bloom	0.339014
SRR3384919	fruit	no	4 week after full bloom	0.548099
SRR3384923	fruit	no	5 week after full bloom	0.29785
SRR3384918	fruit	no	6 week after full bloom	0.393737
SRR3384917	fruit	no	8 week after full bloom	0.329106
SRR3384916	fruit	no	10 week after full bloom	0.369235
SRR3384915	fruit	no	12 week after full bloom	0.390889
SRR3384914	fruit	no	14 week after full bloom	0.289905
SRR3384913	fruit	no	16 week after full bloom	0.183863
SRR3384912	fruit	no	18 week after full bloom	0.123247
SRR3384911	fruit	no	19 week after full bloom	0.260058
SRR3384910	fruit	no	20 week after full bloom	0.166597
SRR768128	whole fruit	no	25 days post anthesis	0.6438
SRR768129	whole fruit	no	35 days post anthesis	0.206205
SRR768130	whole fruit	no	60 days post anthesis	0.197555
SRR768131	whole fruit	no	87 days post anthesis	0.260228
SRR7343308	immature fruit flesh	no	immature	0.78724
SRR7343309	immature fruit flesh	no	immature	0.785013
SRR6320494	ripe fruit flesh	no	mature	0.631462
SRR5405143	ripe fruit peel	no	mature	0.291972
SRR6320572	ripe fruit peel	no	mature	1.10301
SRR7403504	fruit	uninfected	mature	0.469903
SRR7403506	fruit	uninfected	mature	0.391882
SRR7403507	fruit	uninfected	mature	0.449784
SRR7403500	fruit	infected with penicillium expansum	mature	0.0319602
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0683813
SRR7403502	fruit	infected with penicillium expansum	mature	0.158606
SRR7403503	fruit	infected with penicillium expansum	mature	0.029525
SRR7403505	fruit	infected with penicillium expansum	mature	0.0265395
SRR1613973	Central seeds	no	20DAPF	0.413095
SRR1613974	Central seeds	no	20DAPF	0.311271
SRR1613975	Central seeds	no	20DAPF	0.323164
SRR1613976	Lateral seeds	no	20DAPF	0.294167
SRR1613977	Lateral seeds	no	20DAPF	0.265489
SRR1613978	Lateral seeds	no	20DAPF	0.238059
SRR3744786	stem	no	mature	10.9911
SRR3744787	stem	no	mature	10.1076
SRR3744772	stem	no	mature	10.9182
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.360516
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.822144
SRR1089478	leaf	Virus-free	plantlets	0.0858359
SRR1089477	leaf	ASGV-infected	plantlets	0.133164
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.0950117
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.68783
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.170558
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.12551
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.444243
SRR6308182	young leaf	no	immature leaves	0.573968
SRR3744769	leaf	no	mature	0.724214
SRR3744770	leaf	no	mature	0.682976
SRR3744771	leaf	no	mature	0.468957
SRR5405145	leaf	no	mature	4.49642
SRR6320561	leaf	no	mature	5.41857