Gene detail

Detail information of MD11G1296400 Annotation

Gene ID	Annotation
MD11G1296400	BRI1 suppressor 1 (BSU1)-like 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM1055	sorting nexin-1/2 retromer complex integral component of endoplasmic reticulum membrane multivesicular body Cul4-RING E3 ubiquitin ligase complex

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1296400	mRNA	Chr11	41407336	41413456	+

Sequences

CDS:

MD11G1296400

GAAAAAAGAAAATTAAAGTGTCCGGAGCCGAGGGCCGGGCCCCAGAAGCACCACAATCACAGCCAACAGCGATCAAAGCTTCATCATCGTCCCCGCGCAGAAAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCAGCAGATCAAATCAGACGGCTCTGCTAGTGGCTGGTGGTGGTGGTGGTGCTCCTGCTTCCGGGTTTGGGTTTTGATGGGTTCGAAGCCATGGCTGTTCCCGGCTCCGACCTATCGTACTCTCGAGACCTTTTGGGATTGCGACGACGACGCCCCTGGTCCGCGCTGCAGTCACACCCTCACCGCCGTCGCCGCCACCAAGACCCACGGCCCCCGTCTCATCCTTTTCGGCGGTGCCACCGCCATTGAAGGCGGTGCCGCGTCCTCCGCCCCTGGCATCAGGTTAGCTGGGGTGACCAATTCGGTGCATTCCTATGATATTCTCACCAGGAAATGGACTAGAATGAGGCCTGCAGGTGAGCCACCCTCTCCGAGGGCAGCTCACGCAGCAGCTGCGGTGGGCACTATGGTTGTATTTCAGGGCGGTATAGGTCCTGCTGGGCATTCCACAGATGATCTCTACGTGCTGGACTTAGCCAACGATAAATTTAAATGGCACAGAGTGGTTGTACAAGGGCAAGGACCCGGGCCTCGCTACGGCCATGTAATGGACTTAGTTGCTCAAAGATATCTTGTTACCGTCAGCGGAAACGATGGAAAAAGAATTCATTCGGATGCTTGGGCTCTGGATACTGCTCAGAAACCTTATGCATGGGCTAGGCTGAACCCAGAAGGGGATAGACCGTCTGCTAGAATGTATGCAACAGCCAGTTCTCGCTCAGATGGTATGTTTTTGCTTTGTGGTGGAAGAGATATTTCTGGAACGCCACTAGCAGACGCTTATGGACTGCTTATGCATAGGAATGGTCAGTGGGAGTGGACCCTTGCACCTGGTGTATCCCCTTCACCAAGATATCAACATGCGGCAGTTTTTGTTGGTGCAAGATTACATGTCACAGGAGGTGCTCTTAGGGGAGGTCGTGGTATAGAAGGTGAAGCTGCTATTGCAGTATTGGACACTGCTGCTGGAGTTTGGTTGGACAGAAATGGGCTTGTGACTTCCTCACGGACAGGAAAGGGACAGAATGACCATGATCCTTCTTTGGAGCTCATGCGTCGTTCTCGCCATGCAGCTGCATCTCTTGGTGTTCGTATATATATTTATGGTGGTCTTAAAGGAGACATCCTGCTAGATGATTTCCTGGTTGCAGAAAATTCATCAGTTCAGTCTGAAGGTAATTCGCCTGTTGTAACGTCTGAGAGATCCCCAACGGTATCCAGTCCCAGAATGTTTCATGCTAACACAAGGACTTTTGGAACATCATCTTCTGATGGTGAAACTGAGAGTCCCTCGTCAACTGGCTTGAGCATGGACAAAAGTTCAATGGAGAAACTCCGGGAGGCTTCTGCTGCCGAAGCTGAGGCAGCTAGTGCTGTTTGGCAAGCTGTGCAATCAACATCTGCTACTCCTTCTGAAGAAACATCCGTTTCAGATGATAATTCACAAGTTGCAGAAACATTGTCTGATGGTAGTGACACCGAGGCAGATGTTCGTCTTCATCACAGAGCTGTTGTTGTTGCCAAAGAGGCTGTAGGCAACTTGGGTGGGATGGTAAGACAGTTGTCTTTGGATCAATTTGAAAATGAGAGCAGACGAACGATTCCAATGAACAATGACTTATCACATCCCAACAAAAAGTACACCAGGCAGAAGTCTCCACAAGGGCTACATAAGAAGGTTATATCTACATTGTTGAGGCCTCGAAACTGGAAACCCCCTGTCAATAGGAAGTTTTTCCTGGATTCTTATGAAGTGGGGGAACTTTGTTATGCTGCTGAGCAGATATTTATGCACGAGCAAACAGTTCTTCAGCTGAAAGCCCCAGTAAAAGTATTTGGCGATCTTCATGGACAGTTTGGTGATTTAATGCGCTTATTTGATGAATATGGATTTCCATCTGCTGCCGGAGACATAACGTATATCGACTACTTGTTTTTGGGGGATTATGTCGATCGAGGACAGCACAGCTTGGAGACCATAACTTTGCTCCTTGCACTGAAGATCGAGTATCCCGACAATGTTCACTTAATACGTGGAAACCATGAAGCTGCTGATATCAATGCACTCTTTGGTTTTCGTATTGAATGCATTGAGAGAATGGGTGAGAATGATGGAATCTGGGCATGGACTCGGTTCAATCAACTTTTCAACTATCTCCCACTTGCTGCTCTGATTGAAAAGAAAATTATCTGTATGCATGGAGGCATTGGGAGATCTATCAATTCTGTAGAACAGATAGAGAAGCTTGAAAGACCCATTACAATGGATGCTGGCTCTATAATTTTAATGGATCTTTTGTGGTCCGATCCCACAGAAAACGACAGTGTAGAGGGCTTGAGACCAAATGCCAGAGGGCCTGGTCTTGTCACCTTTGGGCCTGATCGTGTCGCAGAATTTTGTAAGAGAAACAAATTACAACTCATTGTAAGAGCTCATGAATGTGTCATGGATGGATTTGAAAGATTTGCCCAGGGACAGTTGATCACTCTTTTTTCTGCAACCAACTATTGCGGGACGGCAAACAATGCTGGTGCTATACTGGTCGTTGGCAGAGGTTTGGTTGTGGTTCCAAAATTAATCCATCCTTTGCCGCCTCCTCTTCAGTCACCGGAGACATCTCCCGAACGGGTCATAGACGACACATGGATGCAGGAGCTCAACATTCAAAGACCACCAACGCCTACTCGTGGTCGACCACAGCCTGATCTTGATCGAAACTCACTTGCATATATATAGCTCACAGATTTCAGTATTTCCAACCGGTGAATGTGACAATCCACATTTCTCCCCAGGCCCGATCCTTTCCCAGTTCCCACATTATGGATTGCCTTGCTCAACACAGCGCGCCATCGCGTTCTCATTTGGATGTTATCGTTGCAGAAGTTGAAGCCTCGTCTAGTGTACACAATCTTAGAATGCTCGAGATTTAGACGTTTAGGGACCAAATTCTTCGTTTCTCATTCATCGATTTTGTAATATATGTACAACAAGAAGACTTTTTGAAGCTAAATAGAGAGAACTTATAGGGAAGGGAAATTGGTTAAATTTTGTTTCACTGTGATTTATGTAACATAGACAACAACTTACGTTTGATTATTTCGTAAGTGGTTCTTCTCTTTTGGGGAGTGGTGTTTCAGAACAACCTCATAGATTTGTAATTGTACATTTGTTGTCTTGATACAAGCGATATTGGGAGT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G03080.1	1	BSL1\|BRI1 suppressor 1 (BSU1)-like 1
Pyrus communis	PCP042484.1	1	-
Pyrus x bretschneideri	Pbr041938.2	1	-
Rubus occidentalis	Ro02_G09625	1	-
Fragaria vesca	mrna27763.1	1	BRI1 suppressor 1 (BSU1)-like 2
Solanum lycopersicum	Solyc09g074320.2.1	1	BRI1 suppressor 1 (BSU1)-like 1
Solanum lycopersicum	Solyc06g073960.2.1	1	BRI1 suppressor 1 (BSU1)-like 2
Populus trichocarpa	Potri.014G135800.1	1	BRI1 suppressor 1 (BSU1)-like 1
Nicotiana benthamiana	Niben101Scf05301g00016.1	1	Serine/threonine protein phosphatase family protein LENGTH=793
Nicotiana benthamiana	Niben101Scf21770g00007.1	0.892	Serine/threonine protein phosphatase family protein LENGTH=793
Oryza sativa	LOC_Os05g05240.1	1	"serine/threonine protein phosphatase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0030145	manganese ion binding	molecular_function
GO:0005515	protein binding	molecular_function
GO:0004721	phosphoprotein phosphatase activity	molecular_function
GO:0005506	iron ion binding	molecular_function

KEGG

KO	Description	Enzyme
K01090	protein phosphatase	EC:3.1.3.16

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.24	Metallophos	583	790	7.70E-32

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.03241
SRR5252888	dormant buds	no	dormant buds(0 month)	18.2976
SRR5252889	dormant buds	no	dormant buds(0 month)	20.4026
SRR5252886	dormant buds	no	dormant buds(1 months)	24.1444
SRR5252887	dormant buds	no	dormant buds(1 months)	21.1925
SRR5252884	dormant buds	no	dormant buds(2 months)	24.3129
SRR5252882	dormant buds	no	dormant buds(3 months)	16.2563
SRR5252883	dormant buds	no	dormant buds(3 months)	22.059
SRR5252880	dormant buds	no	dormant buds(4 months)	13.8771
SRR5252881	dormant buds	no	dormant buds(4 months)	13.2228
SRR5252878	bud break	no	bud break	9.95996
SRR5252879	bud break	no	bud break	6.67743
SRR3744766	flower	no	mature	17.1118
SRR3744767	flower	no	mature	20.3127
SRR3744768	flower	no	mature	20.226
SRR6308190	stigmas	no	open flowers	17.3358
SRR6308181	styles	no	open flowers	18.1807
SRR6308188	filaments	no	open flowers	13.5349
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	18.594
SRR6308192	pollen	no	open flowers	38.1267
SRR6308191	petals	no	open flowers	16.9777
SRR6308194	sepals	no	open flowers	24.3038
SRR6308193	receptacles	no	open flowers	16.341
SRR6308189	ovaries	no	open flowers	16.7881
SRR3384922	fruit	no	1 week after full bloom	10.408
SRR3384921	fruit	no	2 week after full bloom	6.26754
SRR3384920	fruit	no	3 week after full bloom	6.77292
SRR3384919	fruit	no	4 week after full bloom	5.81475
SRR3384923	fruit	no	5 week after full bloom	6.6718
SRR3384918	fruit	no	6 week after full bloom	6.93641
SRR3384917	fruit	no	8 week after full bloom	6.85874
SRR3384916	fruit	no	10 week after full bloom	7.55055
SRR3384915	fruit	no	12 week after full bloom	7.22617
SRR3384914	fruit	no	14 week after full bloom	6.50433
SRR3384913	fruit	no	16 week after full bloom	8.05678
SRR3384912	fruit	no	18 week after full bloom	7.32211
SRR3384911	fruit	no	19 week after full bloom	6.79376
SRR3384910	fruit	no	20 week after full bloom	7.67019
SRR768128	whole fruit	no	25 days post anthesis	9.15081
SRR768129	whole fruit	no	35 days post anthesis	5.04032
SRR768130	whole fruit	no	60 days post anthesis	5.74002
SRR768131	whole fruit	no	87 days post anthesis	7.68099
SRR7343308	immature fruit flesh	no	immature	14.1222
SRR7343309	immature fruit flesh	no	immature	14.9277
SRR6320494	ripe fruit flesh	no	mature	14.5397
SRR5405143	ripe fruit peel	no	mature	12.4941
SRR6320572	ripe fruit peel	no	mature	14.9475
SRR7403504	fruit	uninfected	mature	10.2868
SRR7403506	fruit	uninfected	mature	10.3605
SRR7403507	fruit	uninfected	mature	11.0495
SRR7403500	fruit	infected with penicillium expansum	mature	23.9385
SRR7403501	fruit	infected with penicillium expansum	mature	24.6526
SRR7403508	fruit	infected with penicillium expansum	mature	24.2845
SRR7403502	fruit	infected with penicillium expansum	mature	25.3184
SRR7403503	fruit	infected with penicillium expansum	mature	26.1498
SRR7403505	fruit	infected with penicillium expansum	mature	25.8189
SRR1613973	Central seeds	no	20DAPF	5.90749
SRR1613974	Central seeds	no	20DAPF	7.21581
SRR1613975	Central seeds	no	20DAPF	6.45973
SRR1613976	Lateral seeds	no	20DAPF	5.6764
SRR1613977	Lateral seeds	no	20DAPF	5.95826
SRR1613978	Lateral seeds	no	20DAPF	6.53507
SRR3744786	stem	no	mature	19.9318
SRR3744787	stem	no	mature	19.7715
SRR3744772	stem	no	mature	20.8789
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.6802
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.5396
SRR1089478	leaf	Virus-free	plantlets	9.5593
SRR1089477	leaf	ASGV-infected	plantlets	9.20612
SRR767660	leaf	uninfected	fully developed	4.07773
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.27017
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.73524
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.23753
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.50452
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.54904
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.60074
SRR6308182	young leaf	no	immature leaves	10.8476
SRR3744769	leaf	no	mature	19.9092
SRR3744770	leaf	no	mature	19.9677
SRR3744771	leaf	no	mature	20.5744
SRR5405145	leaf	no	mature	26.4909
SRR6320561	leaf	no	mature	18.7629