Gene detail

Detail information of MD12G1051100 Annotation

Gene ID	Annotation
MD12G1051100	RNA binding

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0498	nuclear pore complex protein Nup133 attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation embryo sac development meiotic chromosome condensation meiotic sister chromatid cohesion cohesin complex nuclear chromosome

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1051100	mRNA	Chr12	5783020	5807714	-

Sequences

CDS:

MD12G1051100

CTGTCCCCTTTCTCCTTAAACCTCTAGAACCCCAATCCTAGAGAAAAACCCAGACGCATATATACGCACACACGTATATATATATATACACGCTCATCTCTCGTCGCATACGACCACTGCTGTCGTTCTGTGAAAATGGCACCGCCTTTCAAGAAACCTGAGGCCAAGAAGAAGGCCGGAGATGCTCCAAAGTTCAACAAGTCCTCCAAAAAACCGTTCAAACCAAACAAGGACCAAAACGACGACGTCAGGTCTGAAGCCGTCGCTTTGCAGCTCGAAGACGACGTCCCCGACTTCCCCAGAGGGGGAGGAAGTGCTTTGAATCGACAAGAGCGGGATGAAATTCGGGCCGAAGTCGATGCTGAATTTGAGGCAGAGGAGCGGGAGCTGAAGAAGAGGAAGAAGAAAGGGATGCAGAAGAATAGTGTCGCAACGAAGGAGGACGATTTGGGGTCGCTTTTCGGTGACGGTATTTCTGGAAAGCTACCTAAATATGCAAACAAGATCACTATGAAGAATATTTCTGCTGGAATGAAGGTCTGGGGAGTTGTCTCTGAAGTAAATGAAAAGGACCTCGTAATTAGTCTTCCAGGGGGATTGCGTGGATTAGTTCGAGCTTCTGAAGCTTTTGATCCTATTTTGGATGATGAAAATAAGGCTGTAGCAGATAGTCTCCTTCCTAGCGTATTCCATACTGGGCAGCTGGTATCTTGCATTGTATTGAAGTTAGATGAGGATAAGAAAGAGAAAGGGAAAAGGAAGATCTGGCTTTCTTTGCGCCTATCTTCGTTGTACAAGGGCTTCACTTTGGAGTCTGTTCAAGAAGGCATGGTCCTTACTGCATATGTTAAAAGCATTGAAGACCATGGTTATATTCTCCATTTTGGTTTATCTTCATTTACGGGATTTTTGCCAAAAAAGAGTGAATCTGACACCAAGGAGATTCAACTGAAAGCTGGGCAACTACTTCAAGGTGCTGTTAAAAGTGTTGATAAAATCCGCAAGGTTGTGTATTTGAGTTCTGACCCAGAAACTGTGTCAAAATGTGTGACCAAGGATCTCAAGGGAATTTCAATTGATCTACTCGTTCCAGGCATGATGGTTAATGCTCGTGTGCTATCGACCCTTGAAAATGGGGTTATGTTATCATTTCTAACTTACTTTACTGGAACTGTTGATTTATTCCATCTGCAAAATAGTTGCCCTACCATAAACTGGAAGGAGGAGTACAATCAACACAAGAAGGTTAATGCTCGAATATTGTTTATTGATCCTTCAACTAGAGCTGTTGGTTTGACACTGAATCCACATCTTGTCCGTAACAAGGCTCCTCCTTCACTTGTTAAAATCGGAGACATATGTGATGACTCAAAAGTGGTTAGGGTCGACAAAGGATTGGGCCTTCTGCTTGAAATACCATCTACCCCGGTTTCAACTCCGGCATACGTTAGTATATCTGATGTGGCTGAAGAGGATGCTCGAAAGCTTGAAAAAAAGTTCAAGCTAGGTAGTCGTGTTCGTGTCAGAATTCTTGGTTTTAGACACCTGGAAGGGCTTGCGACAGGGACTTTGAAGGCCAGCGCTATGGAAGGGACAGTCTTTACTCATTCTGATGTCAAGCCTGGGATGGTGGTGAGAGGTAAAATCATAGCTGTGGACAGCTTTGGTGCTATCGTGCAATTTTCTGGTGGTGTGAAGGCACTTTGCCCTCTTACTCATATGTCTGAATTTGAAATTGCAAAGCCTGGAAAAAAATTTAAGATTGGAGCTGAACTTCTGTTCCGTGTGCTTGGTTGCAAGTCCAAGAGAATAACTGTTACACACAAGAAAACACTTGTGAAATCGAAACATGGGATTGTTAGTTCATATGCTGAGGCTGCTGACGGATTAATCACCCATGGGTGGATAAGAAAGATTGAAGAACATGGATGCTTTGTCCATTTTTACAATGGAGTCCAAGGATTTGCTCCAAGATCTGAACTCGGATTGGAACCAGGATCTGACCCAAGTTCAATGTATCATGTTGGGCAAGTTGTCAAATGTAGAGTTATCAATTCCAATCCTACATCAAGGCGGATCAAACTTAGCTTCGTAATAAGGCCTGCAAGGGTTTCTGAGGATGATGTAGCCAAGTTGGGTTGCCTTGTTTCTGGAGTTGTTGATCGAGTAACCCCCAGTGCTGTTTATGTTAATGGAAAAGGTTACTCGATGGGAACAATTTTTACTGATCACTTGTCAGATCACCACGGGCTTGCTGCTTTGATGAGGTCAGTTTTGAAGCCTGGATATGAATTTGATCAATTGCTGGTGCTAGACATTGAAGGGAACAATTTGATCCTTTCTGCAAAATATTCTTTGATTAATTCACTTCAGCAGCTTCCCTCAGAACTCAGTCAAGTTCATCCTAACTCGCTAGTACATGGCTACATTTGTAACTTAATTGAAACTGGGTGTTTTGTTCGCTTTCTTGGGCGTTTGACTGGTTTCTCCCCCAGGCATAAGGCAATGGATGACCCTAAAGTTGATCTTTCAGAAACCTATTTCATTGGACAATCTGTTCGCAGTAATATACTAAATGTCAGTAGCGAATCAGGTCGAATAACACTGTCGTTGAAGCAGTCATCTTGCTCTTCAACAGATGTGTCCTTTATTCAGGAGTACTTTATGTTGGAGGAGAAGATTGCTACGCTGCAACTGTTAAACTCAAAAGAATCCAAGTCAAATTGGTCAGAAGGATTTACAATTGGCAGTGTTGTTGAGGGTAAAGTACAGGAGGTAAAGGATGTTGGAGTTGTTGTCAACTTTGAGAAATATAATGACGTCTTTGGTTTCATCACACACTACCAATTAGGTGGGACCGTTGTAGAAACAGGCTCCAGCGTTCATGCAGTTGTACTTGACGTTGCCAAGGCGGAGCACCTTGTTGATTTATCGATGAAACAAGAGTTCACTAATAAATTCAAAGAAAGTTCTGACAAGAAAAGTCATAAGAAGAAACGAAAAAGTGAAGCATTGGATGACCTGGAGGTACATCAGACAGTAAATGCAATTGTTGAGATTGTGAAAGAGAATTACCTGGTTCTTTCAATCCCCAAGTATAATTATGCTGTAGGATATGCATCAATCTCCGACTACAATACTCAAAAAGTTCCTCAGAAACAGTTTTTGAATGGACAAAGTGTTGATGCCACTGTTATGGCTCTTCCAAGCCCTACAACAACAGGTAGGTTGCTTTTACTACTTAAATCTATAAGTGAGTCCGAGACATCCAGTTCAAAACGGGCAAAGAAGAAGTCCAGCTATAAAGTGGGATCTATGGTTGAGGCAGAGATTACAGAAATAAAGCCTCTTGAACTAAGATTGAAATTTGGAATTGGCTTGCATGGGCGGGTTCACATTACAGAGCTAAATGATGAGTTTCTGGAAGACCCATTTAATAACTTCAGAATTGGGCAAACAGTGGCTGCAAAGATCGTTGCCAAGACTAATTATTCAGATAACAACAAAAAGAGCTACCAGTGGGATCTTTCCTTGAAATCTACAATGCTAACGGGTTCCTGTGAAATAGGGGAAAAGATTATAACTGAAGATCTTGATTTCTCAACCGGGCAATGTGTCTCTGGTTATGTTTATAAAGTGGATGGTGAATGGGTCTGGTTGACAATATCTCGAAGTGTTAGGGCTCAGCTTTTTATTCTCGACAGTGCTTGTGAGCCTAGTGAACTTAAAGAATTTCAGAAACGCTTTCACCTGGGAAATGCTGTATCTGGTTATGTCTTAAGTGTTAACAGGGAGAAAAAGCTATTGCGCCTGGTTCTGCATCCTTTTTCTCCCATCTCTGATAAAACTGTTGATCATGGGGTTCCAAAGATGGATGATTCACACATTAACATTATGAATGAGAATGTTACTGCTCATATTCGCGAGGGACGTGTTATAGGTGGGAGAATAATTAAAAAACTTCCAGGTGTTAGTGGAATGACTGTGCAAATTGGACCCCATCTTTATGGCAGGGTCCATTATACTGAACTTTACGACTCATGGGAGTCTGACCCATTGTCTGGATATCATGAAGGGCAATTTGTCAAATGCAAGGTCCTTGAACTTATCCGCTCTGTGAAGGGAACTTTCCACATTGATTTGTCTTTGCGCGCTTCTTTAGTTGGCGGGCTCCGTCCAGATTTTGTGGAACCCCAGGATGACACGCATTCTCAAACCAAACGTGTGGAAACGATCGAAGATCTTAATCCTAACATGGTGGTTCAGGGTTATGTTAAAAATGTAATACCAAAGGGGTGTTTTATTTTACTTTCGCGGAAGCTTGATGCGAAAATTCTCGTCTCCAATTTATCTGATGGATATGTTCAAGATCTCGAAAAGGAATTCCCAGTTGGAAAACTTGTAACTGGCAGGGTTTCATCTGTGGAGCCATTATCAAAGCGAGTTGAAGTCACCTTGAAGACATTGAACACAAGCAGTGTGCCACAATTTGGAAGTGATAATTTGGATAGCTTGCGTGTTGGAGATATAATCTCTGGCAGGGTAAAAAGGATGGAGTCATATGGTTTATTCATCACGATTGACAACACAAACTTGGTTGGACTATGCCATGTGTCGGAGCTTTCAGAAGATAAACTTGACAATATTGAAACTAAATACAAAACAGGAGAGAGGGTGACAGCAAAAGTATTGAAGGTGGACAAGGAAAGGCACCGAGTTTCTCTCGGGATGAAGGATGTTTATATTATGGACAATGATGACCTTGAGACGCCTTCAGAACAAGATCCTGATGAAACCATTGTGGAGAATGTTCTTACGGATGTTACTATGTCAGACATATGTCCCGAAAGCAATTCATTTTTTACCCAGGACATGGACGTCGATAGTAAAAATGCAGAATCCCAGTTTCTTGCACAAGCAGAATCTAGAGCTTTTGTTCCTCCGCTTGACGTCACTCTTGATGACATAGACCAATTCGACGGTGAAGATAAAGAGCATCTTGATGTAGACACTGTCAACGAAAAGAAAATGCAGCCGACAAAGAAAAAAGCTAAGGAAGAGAGGGAGCGCGAAATAAGGTCTGCCGAGGAAAGACTATTGGCAAATGATATACCCAGAACCGATGAGGAATATGAGAAACTAGTTAGAACTTCTCCAAATAGCAGTTTTGTCTGGATAAAATATATGGAATTTGTGCTCTCTGCATCTAATGTTGAGAAGGCACGCTCAATTGCTGAAAGGGCTCTGGCAACAATAAAGTTGGACAAAGAGACTGAGAAGGAGAAGCTCAATGTTTGGGTGGCTTATTTCAATTTGGAAAACAAATACGCAAGTCCTCCAGAGGAAGCTGTAAAGAAAGTCTTTCAAAGAGCAGTACAGTGTAATGATTCCAAAACGGTTCATTTAGCACTTTTAGGACTGTATGAAAGGACTGAGCAACACAGGTTGGCTGATGAGCTACTTGATAAAATGACAAAGAAGTTCAAGACTTCCTGCAAGGTTTGGCTAAGGCGGGTAAAGCTGCTCTTAACGCGACAGCAGGATGGGATTCAGGATGTTCTCAGTCGTGCTGAGAAAGTCCTTCCTAAGCATAAGCTTATCAAATTCAATTCCCAGACAGCTATCCTTGAGTTTAAATGTGGAGAACCCGAGAGAGGACGATCCATGTTTGAGAATATTTTGCGGAATAACCCTAAGAGAACAGACTTGTGGAGCGTCTACCTTGATCAAGAAATTCGACTTGGAAATAGCGATCTGATTCATGCACTATTTGAGAGGGCAACTAGTTTGAGTCTCCCAGCAAAAAAGATGAAGTTCTTATTTAAAAAGTATCTGGCGTACGAGAAGTCACGCGGCGATGAAGAAAAGATCGAGTATGTGAAACGGAAGGCAATGGAGTATGTGGAGAATACAGTAGCTTGATATCAATTGTTCCTCTTACTACGAAGGAACAAAGTTTCCTGGTTCATAATCTTCAGATTGTCAACCAAATTTGCTGTTGGCCGCTTATACGAGAGATGGGGGATGGCCAATTTATCGTCATTGTTGCAATGTCGTTTCAGCTCAATGAGGAGGCTACATGGCAGGATGTAGAAGGCTACCATGGATGAAGCATTTAGAAATTTGAAGACCAATTGTCCCAAGGTTGTAAGAAATAACTGACAACTACGTAAGATTTCCGTCGGAAAGATATTGGCGCTCTTTTTTTTTTTGTTGAAACTGAAACTTATCATTTTTTCTACGGGCGGCGGAGTTTTGATCTCAATTGTAACCCTTCGAGAATTGCAAGTTAATAGAATTCTTCGGTTGAGTAGTTTTCTAGTGAATTTTTCCGTGTTTTTGTTTTCACCCCTTTGTTTTTGGTGAGAAGATTCAATATCCGACAATTATCTTTTGCAATGCTAACTACCAAGTTAATACTAATAGAATTCTTCGGTTAAGTAGTTTTCGAGATTTCATATAACTG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G11964.1	1	RRP5\|Ribosomal RNA Processing 5
Prunus persica	Prupe.7G085700.1.p	1	RNA binding;RNA binding
Pyrus communis	PCP021521.1	1	-
Rosa multiflora	Rmu_sc0002454.1_g000002.1	1	-
Rubus occidentalis	Ro06_G21834	1	-
Fragaria vesca	mrna18082.1	1	RNA binding;RNA binding
Vitis vinifera	GSVIVT01033430001	1	RNA binding;RNA binding
Solanum lycopersicum	Solyc03g051900.2.1	1	RNA binding;RNA binding
Populus trichocarpa	Potri.016G062600.1	1	RNA binding;RNA binding
Nicotiana benthamiana	Niben101Scf02475g10005.1	1	Polyribonucleotide nucleotidyltransferase
Zea mays	GRMZM2G398527_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0003723	RNA binding	molecular_function
GO:0005515	protein binding	molecular_function
GO:0006397	mRNA processing	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00575.19	S1	494	558	4.60E-08
PF00575.19	S1	586	651	2.00E-06
PF00575.19	S1	1057	1114	6.80E-05
PF00575.19	S1	1461	1533	1.20E-15

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.577
SRR5252888	dormant buds	no	dormant buds(0 month)	20.9936
SRR5252889	dormant buds	no	dormant buds(0 month)	22.7342
SRR5252886	dormant buds	no	dormant buds(1 months)	20.7769
SRR5252887	dormant buds	no	dormant buds(1 months)	17.0791
SRR5252884	dormant buds	no	dormant buds(2 months)	29.1073
SRR5252882	dormant buds	no	dormant buds(3 months)	32.587
SRR5252883	dormant buds	no	dormant buds(3 months)	23.5244
SRR5252880	dormant buds	no	dormant buds(4 months)	39.1436
SRR5252881	dormant buds	no	dormant buds(4 months)	35.9427
SRR5252878	bud break	no	bud break	25.3157
SRR5252879	bud break	no	bud break	26.8207
SRR3744766	flower	no	mature	3.66776
SRR3744767	flower	no	mature	3.58849
SRR3744768	flower	no	mature	3.47261
SRR6308190	stigmas	no	open flowers	1.0887
SRR6308181	styles	no	open flowers	1.629
SRR6308188	filaments	no	open flowers	3.54917
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.42628
SRR6308192	pollen	no	open flowers	0.310435
SRR6308191	petals	no	open flowers	5.13013
SRR6308194	sepals	no	open flowers	4.90463
SRR6308193	receptacles	no	open flowers	4.54388
SRR6308189	ovaries	no	open flowers	2.79698
SRR3384922	fruit	no	1 week after full bloom	2.54388
SRR3384921	fruit	no	2 week after full bloom	1.78402
SRR3384920	fruit	no	3 week after full bloom	1.38873
SRR3384919	fruit	no	4 week after full bloom	1.15679
SRR3384923	fruit	no	5 week after full bloom	1.70014
SRR3384918	fruit	no	6 week after full bloom	1.1467
SRR3384917	fruit	no	8 week after full bloom	1.0769
SRR3384916	fruit	no	10 week after full bloom	1.81659
SRR3384915	fruit	no	12 week after full bloom	1.67997
SRR3384914	fruit	no	14 week after full bloom	2.06063
SRR3384913	fruit	no	16 week after full bloom	1.12887
SRR3384912	fruit	no	18 week after full bloom	2.07905
SRR3384911	fruit	no	19 week after full bloom	1.24469
SRR3384910	fruit	no	20 week after full bloom	2.03862
SRR768128	whole fruit	no	25 days post anthesis	3.4472
SRR768129	whole fruit	no	35 days post anthesis	1.56807
SRR768130	whole fruit	no	60 days post anthesis	1.54023
SRR768131	whole fruit	no	87 days post anthesis	2.2987
SRR7343308	immature fruit flesh	no	immature	4.36882
SRR7343309	immature fruit flesh	no	immature	4.14467
SRR6320494	ripe fruit flesh	no	mature	3.53433
SRR5405143	ripe fruit peel	no	mature	5.59933
SRR6320572	ripe fruit peel	no	mature	1.54717
SRR7403504	fruit	uninfected	mature	3.32368
SRR7403506	fruit	uninfected	mature	3.01243
SRR7403507	fruit	uninfected	mature	2.81804
SRR7403500	fruit	infected with penicillium expansum	mature	2.14756
SRR7403501	fruit	infected with penicillium expansum	mature	1.81017
SRR7403508	fruit	infected with penicillium expansum	mature	2.26067
SRR7403502	fruit	infected with penicillium expansum	mature	3.52407
SRR7403503	fruit	infected with penicillium expansum	mature	3.23777
SRR7403505	fruit	infected with penicillium expansum	mature	3.93755
SRR1613973	Central seeds	no	20DAPF	5.61356
SRR1613974	Central seeds	no	20DAPF	6.6494
SRR1613975	Central seeds	no	20DAPF	4.66091
SRR1613976	Lateral seeds	no	20DAPF	4.56329
SRR1613977	Lateral seeds	no	20DAPF	4.04428
SRR1613978	Lateral seeds	no	20DAPF	5.11374
SRR3744786	stem	no	mature	6.46484
SRR3744787	stem	no	mature	6.95663
SRR3744772	stem	no	mature	7.33836
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.65252
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.23136
SRR1089478	leaf	Virus-free	plantlets	3.25578
SRR1089477	leaf	ASGV-infected	plantlets	3.81508
SRR767660	leaf	uninfected	fully developed	0.843899
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.77569
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.605478
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0.59015
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.77635
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.53367
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.956181
SRR6308182	young leaf	no	immature leaves	7.53283
SRR3744769	leaf	no	mature	4.73645
SRR3744770	leaf	no	mature	5.44829
SRR3744771	leaf	no	mature	5.43882
SRR5405145	leaf	no	mature	3.97376
SRR6320561	leaf	no	mature	2.06753