Gene detail

Detail information of MD12G1063300 Annotation

Gene ID	Annotation
MD12G1063300	Cornichon family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0590	reticulon-1 20S proteasome subunit alpha 5 [EC:3.4.25.1] protein CWC15 protein cornichon ribonuclease activity threonine-type endopeptidase activity endoplasmic reticulum tubular network integral component of cytoplasmic side of endoplasmic reticulum membrane proteasome core complex

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1063300	mRNA	Chr12	7400138	7403740	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G12180.1	1	Cornichon family protein
Prunus persica	Prupe.7G070300.1.p	1	Cornichon family protein
Pyrus x bretschneideri	Pbr001752.1	1	-
Vitis vinifera	GSVIVT01033351001	1	Cornichon family protein
Solanum lycopersicum	Solyc03g063970.2.1	1	Cornichon family protein
Solanum lycopersicum	Solyc06g060550.2.1	1	Cornichon family protein
Populus trichocarpa	Potri.006G057300.3	1	Cornichon family protein
Populus trichocarpa	Potri.016G051000.4	1	Cornichon family protein
Nicotiana benthamiana	Niben101Scf00690g01001.1	1	Protein cornichon homolog 1
Nicotiana benthamiana	Niben101Scf14344g01018.1	0.709	Protein cornichon homolog 1

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component
GO:0035556	intracellular signal transduction	biological_process

KEGG

KO	Description	Enzyme
K20368	protein cornichon	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.88718
SRR5252888	dormant buds	no	dormant buds(0 month)	15.5824
SRR5252889	dormant buds	no	dormant buds(0 month)	18.6111
SRR5252886	dormant buds	no	dormant buds(1 months)	15.0376
SRR5252887	dormant buds	no	dormant buds(1 months)	21.5268
SRR5252884	dormant buds	no	dormant buds(2 months)	13.8034
SRR5252882	dormant buds	no	dormant buds(3 months)	11.232
SRR5252883	dormant buds	no	dormant buds(3 months)	18.6433
SRR5252880	dormant buds	no	dormant buds(4 months)	13.5558
SRR5252881	dormant buds	no	dormant buds(4 months)	9.40396
SRR5252878	bud break	no	bud break	14.5406
SRR5252879	bud break	no	bud break	10.9412
SRR3744766	flower	no	mature	14.8367
SRR3744767	flower	no	mature	14.794
SRR3744768	flower	no	mature	13.6817
SRR6308190	stigmas	no	open flowers	21.2777
SRR6308181	styles	no	open flowers	18.0544
SRR6308188	filaments	no	open flowers	17.3243
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.7614
SRR6308192	pollen	no	open flowers	6.17702
SRR6308191	petals	no	open flowers	14.5128
SRR6308194	sepals	no	open flowers	9.09245
SRR6308193	receptacles	no	open flowers	22.0913
SRR6308189	ovaries	no	open flowers	22.2675
SRR3384922	fruit	no	1 week after full bloom	30.4533
SRR3384921	fruit	no	2 week after full bloom	25.9475
SRR3384920	fruit	no	3 week after full bloom	23.1969
SRR3384919	fruit	no	4 week after full bloom	24.1228
SRR3384923	fruit	no	5 week after full bloom	22.0188
SRR3384918	fruit	no	6 week after full bloom	23.5994
SRR3384917	fruit	no	8 week after full bloom	21.7268
SRR3384916	fruit	no	10 week after full bloom	14.3263
SRR3384915	fruit	no	12 week after full bloom	18.8481
SRR3384914	fruit	no	14 week after full bloom	14.7222
SRR3384913	fruit	no	16 week after full bloom	10.8376
SRR3384912	fruit	no	18 week after full bloom	13.2895
SRR3384911	fruit	no	19 week after full bloom	11.4456
SRR3384910	fruit	no	20 week after full bloom	10.8965
SRR768128	whole fruit	no	25 days post anthesis	13.9046
SRR768129	whole fruit	no	35 days post anthesis	24.7523
SRR768130	whole fruit	no	60 days post anthesis	10.7791
SRR768131	whole fruit	no	87 days post anthesis	11.7646
SRR7343308	immature fruit flesh	no	immature	15.9314
SRR7343309	immature fruit flesh	no	immature	20.99
SRR6320494	ripe fruit flesh	no	mature	11.612
SRR5405143	ripe fruit peel	no	mature	6.92615
SRR6320572	ripe fruit peel	no	mature	8.16219
SRR7403504	fruit	uninfected	mature	9.19745
SRR7403506	fruit	uninfected	mature	9.85864
SRR7403507	fruit	uninfected	mature	8.73669
SRR7403500	fruit	infected with penicillium expansum	mature	3.84535
SRR7403501	fruit	infected with penicillium expansum	mature	3.37197
SRR7403508	fruit	infected with penicillium expansum	mature	2.24384
SRR7403502	fruit	infected with penicillium expansum	mature	3.46963
SRR7403503	fruit	infected with penicillium expansum	mature	4.35972
SRR7403505	fruit	infected with penicillium expansum	mature	3.77372
SRR1613973	Central seeds	no	20DAPF	32.9651
SRR1613974	Central seeds	no	20DAPF	33.2516
SRR1613975	Central seeds	no	20DAPF	35.4343
SRR1613976	Lateral seeds	no	20DAPF	33.4068
SRR1613977	Lateral seeds	no	20DAPF	37.6532
SRR1613978	Lateral seeds	no	20DAPF	33.3264
SRR3744786	stem	no	mature	12.0885
SRR3744787	stem	no	mature	13.6406
SRR3744772	stem	no	mature	11.7748
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.9754
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.7961
SRR1089478	leaf	Virus-free	plantlets	13.2691
SRR1089477	leaf	ASGV-infected	plantlets	12.4596
SRR767660	leaf	uninfected	fully developed	13.4401
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.1217
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	45.711
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.9607
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.35265
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.72268
SRR6308182	young leaf	no	immature leaves	16.9451
SRR3744769	leaf	no	mature	13.4109
SRR3744770	leaf	no	mature	11.014
SRR3744771	leaf	no	mature	12.5627
SRR5405145	leaf	no	mature	7.50374
SRR6320561	leaf	no	mature	6.35455