Gene detail

Detail information of MD12G1077100 Annotation

Gene ID	Annotation
MD12G1077100	DNA directed RNA polymerase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0241	intracellular protein transport COPII vesicle coat myosin complex leaf pavement cell development mitochondrion localization peroxisome localization retrograde transport Golgi localization protein N-linked glycosylation gynoecium development cytosol membrane coat exocyst ER body organization actin filament-based movement motor activity clathrin binding vesicle-mediated transport sugar mediated signaling pathway

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1077100	mRNA	Chr12	9382319	9384511	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G41010.1	1	"NRPB12;NRPD12;NRPE12\|DNA directed RNA polymerase, 7 kDa subunit"
Prunus persica	Prupe.5G244400.1.p	1	"DNA directed RNA polymerase, 7 kDa subunit"
Prunus persica	Prupe.4G246000.1.p	1	"DNA directed RNA polymerase, 7 kDa subunit"
Rubus occidentalis	Ro05_G03698	1	-
Fragaria vesca	mrna03320.1	1	"DNA directed RNA polymerase, 7 kDa subunit"
Vitis vinifera	GSVIVT01012569001	0.68	"DNA directed RNA polymerase, 7 kDa subunit"
Vitis vinifera	GSVIVT01035228001	1	"DNA directed RNA polymerase, 7 kDa subunit"
Vitis vinifera	GSVIVT01012562001	0.6	"DNA directed RNA polymerase, 7 kDa subunit"
Solanum lycopersicum	Solyc10g007650.2.1	1	"DNA directed RNA polymerase, 7 kDa subunit"
Populus trichocarpa	Potri.011G144800.1	1	"DNA directed RNA polymerase, 7 kDa subunit"
Nicotiana benthamiana	Niben101Scf01328g00006.1	1	"DNA-directed RNA polymerases I, II, and III subunit RPABC4"
Oryza sativa	LOC_Os01g34614.1	1	"DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed"
Oryza sativa	LOC_Os07g01450.1	1	"DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed"
Zea mays	GRMZM2G146331_P01	1	"DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide "

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003899	DNA-directed RNA polymerase activity	molecular_function

KEGG

KO	Description	Enzyme
K03009	"DNA-directed RNA polymerases I, II, and III subunit RPABC4"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03604.9	DNA_RNApol_7kD	11	42	7.90E-18

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	142.605
SRR5252888	dormant buds	no	dormant buds(0 month)	12.004
SRR5252889	dormant buds	no	dormant buds(0 month)	18.5412
SRR5252886	dormant buds	no	dormant buds(1 months)	13.2155
SRR5252887	dormant buds	no	dormant buds(1 months)	22.4187
SRR5252884	dormant buds	no	dormant buds(2 months)	17.2543
SRR5252882	dormant buds	no	dormant buds(3 months)	10.3831
SRR5252883	dormant buds	no	dormant buds(3 months)	18.3855
SRR5252880	dormant buds	no	dormant buds(4 months)	12.953
SRR5252881	dormant buds	no	dormant buds(4 months)	14.1377
SRR5252878	bud break	no	bud break	18.4922
SRR5252879	bud break	no	bud break	22.175
SRR3744766	flower	no	mature	54.8358
SRR3744767	flower	no	mature	61.4359
SRR3744768	flower	no	mature	66.9008
SRR6308190	stigmas	no	open flowers	43.1655
SRR6308181	styles	no	open flowers	54.6767
SRR6308188	filaments	no	open flowers	62.8833
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	33.2962
SRR6308192	pollen	no	open flowers	30.0765
SRR6308191	petals	no	open flowers	52.4966
SRR6308194	sepals	no	open flowers	38.7185
SRR6308193	receptacles	no	open flowers	65.8772
SRR6308189	ovaries	no	open flowers	55.1696
SRR3384922	fruit	no	1 week after full bloom	125.021
SRR3384921	fruit	no	2 week after full bloom	111.421
SRR3384920	fruit	no	3 week after full bloom	109.888
SRR3384919	fruit	no	4 week after full bloom	75.4715
SRR3384923	fruit	no	5 week after full bloom	81.4442
SRR3384918	fruit	no	6 week after full bloom	77.4424
SRR3384917	fruit	no	8 week after full bloom	72.8108
SRR3384916	fruit	no	10 week after full bloom	53.6703
SRR3384915	fruit	no	12 week after full bloom	73.3523
SRR3384914	fruit	no	14 week after full bloom	51.6282
SRR3384913	fruit	no	16 week after full bloom	42.6145
SRR3384912	fruit	no	18 week after full bloom	48.0796
SRR3384911	fruit	no	19 week after full bloom	40.5114
SRR3384910	fruit	no	20 week after full bloom	36.2747
SRR768128	whole fruit	no	25 days post anthesis	124.065
SRR768129	whole fruit	no	35 days post anthesis	78.3059
SRR768130	whole fruit	no	60 days post anthesis	37.7007
SRR768131	whole fruit	no	87 days post anthesis	13.0203
SRR7343308	immature fruit flesh	no	immature	27.6643
SRR7343309	immature fruit flesh	no	immature	50.5858
SRR6320494	ripe fruit flesh	no	mature	27.9136
SRR5405143	ripe fruit peel	no	mature	30.7347
SRR6320572	ripe fruit peel	no	mature	34.6482
SRR7403504	fruit	uninfected	mature	29.4402
SRR7403506	fruit	uninfected	mature	29.6856
SRR7403507	fruit	uninfected	mature	30.3513
SRR7403500	fruit	infected with penicillium expansum	mature	23.0574
SRR7403501	fruit	infected with penicillium expansum	mature	29.0842
SRR7403508	fruit	infected with penicillium expansum	mature	26.5166
SRR7403502	fruit	infected with penicillium expansum	mature	25.2689
SRR7403503	fruit	infected with penicillium expansum	mature	30.8859
SRR7403505	fruit	infected with penicillium expansum	mature	26.8054
SRR1613973	Central seeds	no	20DAPF	70.478
SRR1613974	Central seeds	no	20DAPF	73.037
SRR1613975	Central seeds	no	20DAPF	80.4321
SRR1613976	Lateral seeds	no	20DAPF	68.5084
SRR1613977	Lateral seeds	no	20DAPF	87.047
SRR1613978	Lateral seeds	no	20DAPF	74.0114
SRR3744786	stem	no	mature	55.1698
SRR3744787	stem	no	mature	63.8096
SRR3744772	stem	no	mature	51.6756
SRX765691	seedling shoot apex	no	4-6 week old seedling	39.5299
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	62.8267
SRR1089478	leaf	Virus-free	plantlets	9.91582
SRR1089477	leaf	ASGV-infected	plantlets	11.2416
SRR767660	leaf	uninfected	fully developed	46.2804
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	73.884
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	39.9855
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	99.7412
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	56.8965
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	52.9098
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	51.9156
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	55.6218
SRR6308182	young leaf	no	immature leaves	55.9333
SRR3744769	leaf	no	mature	44.1562
SRR3744770	leaf	no	mature	42.2014
SRR3744771	leaf	no	mature	45.2736
SRR5405145	leaf	no	mature	25.438
SRR6320561	leaf	no	mature	45.1971