Gene detail

Detail information of MD12G1092100 Annotation

Gene ID	Annotation
MD12G1092100	Single-stranded nucleic acid binding R3H protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0338	sphinganine C4-monooxygenase [EC:1.14.18.5] translation initiation factor 2 subunit 1 eukaryotic translation initiation factor 2 complex casein kinase II subunit alpha [EC:2.7.11.1] Casein Kinase II Family

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1092100	mRNA	Chr12	11782158	11785659	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G56680.1	1	Single-stranded nucleic acid binding R3H protein
Prunus persica	Prupe.7G027300.1.p	1	Single-stranded nucleic acid binding R3H protein
Pyrus communis	PCP007484.1	1	-
Pyrus x bretschneideri	Pbr024909.1	1	-
Rubus occidentalis	Ro06_G27546	1	-
Vitis vinifera	GSVIVT01025786001	1	Single-stranded nucleic acid binding R3H protein
Solanum lycopersicum	Solyc10g078300.1.1	1	Single-stranded nucleic acid binding R3H protein
Populus trichocarpa	Potri.016G032500.1	1	Single-stranded nucleic acid binding R3H protein
Nicotiana benthamiana	Niben101Scf01999g02008.1	1	Single-stranded nucleic acid binding R3H protein LENGTH=353
Oryza sativa	LOC_Os05g34070.1	1	"DIP1, putative, expressed"
Zea mays	GRMZM2G010302_P01	1	DIP1;
Zea mays	GRMZM2G055970_P01	0.778	Nucleic acid binding protein isoform 1; Nucleic acid binding protein isoform 2;

Gene Ontology

GO term	Description	Category
GO:0003676	nucleic acid binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01424.18	R3H	37	98	6.50E-12
PF12752.3	SUZ	125	174	2.30E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	37.3767
SRR5252888	dormant buds	no	dormant buds(0 month)	26.6124
SRR5252889	dormant buds	no	dormant buds(0 month)	27.7724
SRR5252886	dormant buds	no	dormant buds(1 months)	24.0396
SRR5252887	dormant buds	no	dormant buds(1 months)	26.1021
SRR5252884	dormant buds	no	dormant buds(2 months)	45.6085
SRR5252882	dormant buds	no	dormant buds(3 months)	37.3812
SRR5252883	dormant buds	no	dormant buds(3 months)	49.1478
SRR5252880	dormant buds	no	dormant buds(4 months)	39.3684
SRR5252881	dormant buds	no	dormant buds(4 months)	38.1398
SRR5252878	bud break	no	bud break	29.238
SRR5252879	bud break	no	bud break	21.4157
SRR3744766	flower	no	mature	32.6818
SRR3744767	flower	no	mature	33.0731
SRR3744768	flower	no	mature	32.3171
SRR6308190	stigmas	no	open flowers	18.7863
SRR6308181	styles	no	open flowers	15.8251
SRR6308188	filaments	no	open flowers	18.1937
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	83.1506
SRR6308192	pollen	no	open flowers	588.911
SRR6308191	petals	no	open flowers	15.7283
SRR6308194	sepals	no	open flowers	15.494
SRR6308193	receptacles	no	open flowers	14.8951
SRR6308189	ovaries	no	open flowers	16.5582
SRR3384922	fruit	no	1 week after full bloom	20.5364
SRR3384921	fruit	no	2 week after full bloom	20.9335
SRR3384920	fruit	no	3 week after full bloom	33.5732
SRR3384919	fruit	no	4 week after full bloom	30.8545
SRR3384923	fruit	no	5 week after full bloom	23.5202
SRR3384918	fruit	no	6 week after full bloom	23.7362
SRR3384917	fruit	no	8 week after full bloom	29.4354
SRR3384916	fruit	no	10 week after full bloom	34.5358
SRR3384915	fruit	no	12 week after full bloom	40.0052
SRR3384914	fruit	no	14 week after full bloom	36.3512
SRR3384913	fruit	no	16 week after full bloom	24.9169
SRR3384912	fruit	no	18 week after full bloom	26.906
SRR3384911	fruit	no	19 week after full bloom	22.4272
SRR3384910	fruit	no	20 week after full bloom	24.8829
SRR768128	whole fruit	no	25 days post anthesis	34.602
SRR768129	whole fruit	no	35 days post anthesis	22.9572
SRR768130	whole fruit	no	60 days post anthesis	28.2804
SRR768131	whole fruit	no	87 days post anthesis	24.8988
SRR7343308	immature fruit flesh	no	immature	36.9879
SRR7343309	immature fruit flesh	no	immature	26.8637
SRR6320494	ripe fruit flesh	no	mature	42.204
SRR5405143	ripe fruit peel	no	mature	37.3196
SRR6320572	ripe fruit peel	no	mature	18.101
SRR7403504	fruit	uninfected	mature	43.7616
SRR7403506	fruit	uninfected	mature	43.3909
SRR7403507	fruit	uninfected	mature	42.8258
SRR7403500	fruit	infected with penicillium expansum	mature	61.6751
SRR7403501	fruit	infected with penicillium expansum	mature	61.5068
SRR7403508	fruit	infected with penicillium expansum	mature	62.0191
SRR7403502	fruit	infected with penicillium expansum	mature	61.7825
SRR7403503	fruit	infected with penicillium expansum	mature	64.4261
SRR7403505	fruit	infected with penicillium expansum	mature	61.4244
SRR1613973	Central seeds	no	20DAPF	23.2997
SRR1613974	Central seeds	no	20DAPF	24.1718
SRR1613975	Central seeds	no	20DAPF	22.605
SRR1613976	Lateral seeds	no	20DAPF	21.7803
SRR1613977	Lateral seeds	no	20DAPF	23.8562
SRR1613978	Lateral seeds	no	20DAPF	24.7874
SRR3744786	stem	no	mature	28.7452
SRR3744787	stem	no	mature	27.9958
SRR3744772	stem	no	mature	29.1521
SRX765691	seedling shoot apex	no	4-6 week old seedling	23.556
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	39.7748
SRR1089478	leaf	Virus-free	plantlets	24.3631
SRR1089477	leaf	ASGV-infected	plantlets	21.6471
SRR767660	leaf	uninfected	fully developed	12.1332
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.66972
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.8191
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	10.4488
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.75833
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	13.2228
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	13.201
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	16.8447
SRR6308182	young leaf	no	immature leaves	19.9158
SRR3744769	leaf	no	mature	22.7613
SRR3744770	leaf	no	mature	23.2303
SRR3744771	leaf	no	mature	25.2165
SRR5405145	leaf	no	mature	24.2759
SRR6320561	leaf	no	mature	22.3074