Gene detail

Detail information of MD12G1207600 Annotation

Gene ID	Annotation
MD12G1207600	Protein of unknown function

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0329	meristem initiation determination of bilateral symmetry double-stranded RNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1207600	mRNA	Chr12	28742221	28747441	-

Sequences

CDS:

MD12G1207600

TTTTCGCAAGCTTTGGACTCATCAGCCACTCAGCAGCTCTCTCTCTCTCACACAGCGGTTTGTTTTCTTCTTTCTTCTCCCGATTCCTTGTTGGGTGATAACGTCTCTTCTTCTATCATTTCAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTAACTTTCTCTTTCTCTCTCTCCCCCAGTGTCTGCAAATTCCCTTCTGATTTCTCTCGAGTTTTACACTTTTCCTCTGTTGCATTCTCAAAGACTCTCTCTCTCTCTGTTGCTGAAATTTAAAGACTATTTTTTTACTCTCAAAACCCAAATGATTTAGCTGCTCTACGCTTTCAGATCTTCGATCTTTTACTCCACTCCCGATTTTTCTTGTTTTTCAGCACGAGAAAGAGTCCAAAAATAGAAAGAAAGAGTTGGGGTTTGGAAATGTGGGTTCTTGGGTAAAGTGAATGTGGTTCAATTGACTCAAGGTTTACTCATTCGACTGAAGCTTCTTCTGCGTGTTTGAATATTTGGTTGCTGAGTTCGGAAGCGTCGGATTTGAGTGATTTGGCTCTGTCTTCAGAAGGAAAAAGAAGAAAAAAGGAGTGAACTTTGGAGTGTGTAAAAATGGGGTTCTGCAGATGAAGGATTTCAGGCTCCGATAGGTCTGTGGATGACAAAAATGGAGGTTGAGAAGAAACGTTCGAAAGGGGGCTTTCTTAACTTGTTTGATTGGAATGGAAAATCTCGGAAGAAGCTCTTCTCGGCCAGCTCTGAATCATCGGGATTAAAGCAAGGAAAAGAAAATGTGGAGAGTTTCCAGAAGTCAGGGCTCTATAGGGTAGAGGTGGATGAAAGTGGAACTGGAACCACTTCAAGTAATAAGGGAAGTGGTGATTGGAATTGTGCTTCATCAGTGACTAGTGATGAGGGATGTAGGGCTAGAGCCCCTGGTGTAGTTGCTAGATTAATGGGTCTGGATTCATTGCCTGCTTCAACTGCCCCTGACCCCGAGCTATCTTCTGCCCTACTCTTTGATTCCCAATCACTTAAAGCATCTCAACATGAGAGGAGCGGTCGTAATTTGTGGAGTGATTTTTATGCCACAGAGTACATAAATGTGCCAAAGAAGCTGGATAGGTTTTCTTGGAATCTTGTAGAGCCTAGGACACAGGGGGTGCCGAGCCACCCAATTGAGAGATTTCAAACTGAAGCTTTGCCTCCAAAGTCAGCTAAGTCAATTCCAGTTACTCACCATAAGCTTTTGTCGCCTATCAAGAGTCCTGGCTTCATTCCACCAAAAAATGCAGCTTATGTAATGGAGGCGGCCTCAAAGATCATTGAGGCAAGTCCTCGAGCATCTGCCAGGAGCAAAGTGTCATCTGTAGGGCCTTCTTCGATTCCCTTGAGAATTCGGGATTTGAAAGAGAAGATGGAAGCTGTGCATAAAGCATCAGGACCTGAAAGACCCAAGGAAGCTAGTGACTTCAGGTATATGAAAGGACTGCCTAGTGACAGGCGCCATAACGGGTCAGATAATGTACCAGTAGCCAAGGCTTCTGTGGATTCAGAAAAACAAAGTTACAGGGATGTGAGGAATAAGGGCAAATCAGTATCCCTTGCAGAACAAGCAAAGGTCAATATTCAGAAAAGGGAGGGGTCGACTTCTTGTCGTAATAGAAGTTTTATGAACCAGAAGGAACAGAATGAGGTCAAACAAAATCAGTTTTCCAAGAGCAAGTCAAGTACACAAAGATCTACGCATAAGAGAACTTCCGTTGAGAGCGCCAGAACTGCGCTCAAGCAGAATAACCAGAAGCAGAATTGTGTATCTAACAGAGATAAAATGACTTCAAAAAGTATGGTTCCTAATCAGCCTACTAGAAGAATGCAGCCACCTAATGGCTCTACTGGGCCAATGAAAACTGTGAATAAGACTATTGTAAGCTCTGAGATTGGATCTGGAAAGTTGGGCTCAAGGGCGACTGCTAATGGAAAAGAGTTTCCGTTATCCACAAGAAAGATTGTTTCTGGAAAGGTAAGGTCTGTTCATCAGGATGATCATTCAGAAGAAACTGTTTCCGATGATTCATATATCGGTGGAGATGAAAAGTCAGTGAAATGTAATTTTTCAAGGAACGGGTGTTCCAATTTGGGCGCAGATAATAGGAACCAAGGCATGGATGTTATTTCATTTACATTCACGTCTCCCCTGAAAAGATCATTCTCTGAATTGCAGTCACCTGGTCAACTCACAAGTATAAATAACAGCTTTTATATTGATTCTTCTGGTCACAACAATCAGCAGTTCTATCCCGAGAATTTCACATTATCTTCTCCTGGGTTGAACGTGATTGGTGGTGATGCTTTGAGTGTCCTTCTGGAACAAAAGCTTCAAGAACTTTCATGTAAAGTTGAGTCATCTCAACGCAACCAATCCAGTGAAGTGACTTCTGGTACTTCTACGTCTTGCTTGCAAGATATGGTTTCCAGTGTGGCAAGCACTACATCAAGAGGCAAGGGGTTCAAAGTTGGTTTAACCAAAGATAAAACTGACAGCACAGACGACTATGATTGCTTGTCAGTTGAGGTTAACCAGCAGGGGCAGGGATCAGAAGGGGTGGAAGAGTGTAGCAGTAGCAGTAGAAACATTACAACTGGAAAAGAATTTGATCGACGTCGTAGTCCAGTTTCAATTTTTGAACACTCAGTTGAGAGTCGAACCTGCACAGATAACAGAAGTAGCGCCAATGGCAGTGACAGTGAGAGATGTTCATTGGCTCAACTTCAAGATCAAGGCAGTTCACTCTCTTCATATGGTGTTTCAGATTTCCTCGACTCAGCCTCTTCAGCTTCTAGAGGGGATGCCAGCGGAAAGAGTACGACTATGATATCAGGTTCGCATTCAAATGACTGGGAACTGGAATATGTGAGATACGTCCTTAGCAATGTAGATCTAGAGATGGAAGATTTCGCCTTGGGTGATGCTCAACATGTCATCACCCCAAGTCTCTTTGAGCATTTGGAGAATCAAGAACAAGAAGAGTATCCGAAGGTCGAGCAGAAGATTGTGTTTGACTGCGTAAATGAAGCCCTGCAGTTCAGATGCAAGCAAATATTTGTGGGAAGCCGCAAAGCGTGGGATAGATTGACCGCATTGTCTCAGAGGAAGGGACGATTAGCTGAGGAGTTGCACAAAGAGATTTCGGGTTGGAAAAACATGAGAGAGCTGATGGGGGATGAGCTTGTGGACAAGGATATGAGCACGCAGCGTGGAAGATGGCTCGACTTTGAAGTTGAAGTGTTTGAGGAGGGTCTAGAGATTGAGAAGGGGGTACTAGATTGTCTGGTGGATGAGTTGGTGTCTGATTTTTTGAACTTTTAGGCCCTCTTTAAGCTTGCCTTGTATTAATTATTTACCTTGTGCATACTACAAAATTTTACTATATTTCGGTGTATGACATGCACCAAGACAATTGACGGCTGAACGTGTGATTCAAGTTGTAATGGAAAATTACCACTGGTGCATACTAGAAAATTCTCCTTCTACTGATCCAATCTCCCAAATGA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G26910.3	1	TRM8\|TON1 Recruiting Motif 8
Arabidopsis thaliana	AT5G26910.1	0.997	TRM8\|TON1 Recruiting Motif 8
Arabidopsis thaliana	AT5G26910.2	0.626	TRM8\|TON1 Recruiting Motif 8
Prunus persica	Prupe.6G315200.1.p	1	-
Pyrus communis	PCP044122.1	1	-
Pyrus x bretschneideri	Pbr016413.1	1	-
Rosa multiflora	Rmu_sc0000133.1_g000020.1	1	-
Rubus occidentalis	Ro06_G23815	1	-
Fragaria vesca	mrna31565.1	1	-
Vitis vinifera	GSVIVT01031214001	1	-
Solanum lycopersicum	Solyc01g100290.2.1	1	-
Populus trichocarpa	Potri.005G019700.1	1	-
Populus trichocarpa	Potri.013G010500.1	0.625	-
Nicotiana benthamiana	Niben101Scf00332g02013.1	1	BnaC05g52250D [Brassica napus]
Nicotiana benthamiana	Niben101Scf04276g00003.1	0.83	BnaA09g04050D [Brassica napus]

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14383.2	VARLMGL	77	106	1.80E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.18455
SRR5252888	dormant buds	no	dormant buds(0 month)	10.9675
SRR5252889	dormant buds	no	dormant buds(0 month)	9.95883
SRR5252886	dormant buds	no	dormant buds(1 months)	9.06282
SRR5252887	dormant buds	no	dormant buds(1 months)	7.08939
SRR5252884	dormant buds	no	dormant buds(2 months)	7.40453
SRR5252882	dormant buds	no	dormant buds(3 months)	5.84525
SRR5252883	dormant buds	no	dormant buds(3 months)	3.55015
SRR5252880	dormant buds	no	dormant buds(4 months)	5.35544
SRR5252881	dormant buds	no	dormant buds(4 months)	4.4317
SRR5252878	bud break	no	bud break	10.6207
SRR5252879	bud break	no	bud break	10.4833
SRR3744766	flower	no	mature	0.425969
SRR3744767	flower	no	mature	0.56208
SRR3744768	flower	no	mature	0.570195
SRR6308190	stigmas	no	open flowers	1.22976
SRR6308181	styles	no	open flowers	0.662125
SRR6308188	filaments	no	open flowers	0.991487
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.38472
SRR6308192	pollen	no	open flowers	2.9063
SRR6308191	petals	no	open flowers	0.721744
SRR6308194	sepals	no	open flowers	0.329107
SRR6308193	receptacles	no	open flowers	1.2469
SRR6308189	ovaries	no	open flowers	0.987308
SRR3384922	fruit	no	1 week after full bloom	2.06306
SRR3384921	fruit	no	2 week after full bloom	1.89331
SRR3384920	fruit	no	3 week after full bloom	1.41062
SRR3384919	fruit	no	4 week after full bloom	2.01404
SRR3384923	fruit	no	5 week after full bloom	1.80267
SRR3384918	fruit	no	6 week after full bloom	1.48415
SRR3384917	fruit	no	8 week after full bloom	1.05628
SRR3384916	fruit	no	10 week after full bloom	0.352849
SRR3384915	fruit	no	12 week after full bloom	0.255131
SRR3384914	fruit	no	14 week after full bloom	0.29243
SRR3384913	fruit	no	16 week after full bloom	0.821341
SRR3384912	fruit	no	18 week after full bloom	0.273505
SRR3384911	fruit	no	19 week after full bloom	0.88236
SRR3384910	fruit	no	20 week after full bloom	0.448127
SRR768128	whole fruit	no	25 days post anthesis	4.19402
SRR768129	whole fruit	no	35 days post anthesis	3.17939
SRR768130	whole fruit	no	60 days post anthesis	0.84691
SRR768131	whole fruit	no	87 days post anthesis	2.28741
SRR7343308	immature fruit flesh	no	immature	1.85291
SRR7343309	immature fruit flesh	no	immature	3.29941
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.0736309
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.149681
SRR7403506	fruit	uninfected	mature	0.171293
SRR7403507	fruit	uninfected	mature	0.109513
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.0478408
SRR7403508	fruit	infected with penicillium expansum	mature	0.0344881
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0535406
SRR1613973	Central seeds	no	20DAPF	2.03636
SRR1613974	Central seeds	no	20DAPF	2.26707
SRR1613975	Central seeds	no	20DAPF	2.09373
SRR1613976	Lateral seeds	no	20DAPF	1.97814
SRR1613977	Lateral seeds	no	20DAPF	1.7904
SRR1613978	Lateral seeds	no	20DAPF	1.80973
SRR3744786	stem	no	mature	0.254771
SRR3744787	stem	no	mature	0.282116
SRR3744772	stem	no	mature	0.331632
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.07951
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.05849
SRR1089478	leaf	Virus-free	plantlets	2.16453
SRR1089477	leaf	ASGV-infected	plantlets	1.88048
SRR767660	leaf	uninfected	fully developed	0.659086
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.90318
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.72499
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.43362
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.00505
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.72816
SRR6308182	young leaf	no	immature leaves	3.96977
SRR3744769	leaf	no	mature	0.240044
SRR3744770	leaf	no	mature	0.229663
SRR3744771	leaf	no	mature	0.268801
SRR5405145	leaf	no	mature	1.1531
SRR6320561	leaf	no	mature	1.65103