Gene detail

Detail information of MD12G1216400 Annotation

Gene ID	Annotation
MD12G1216400	Tudor/PWWP/MBT superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0385	DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37] serine/threonine-protein phosphatase 6 regulatory subunit 3

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1216400	mRNA	Chr12	29406009	29410779	-

Sequences

CDS:

MD12G1216400

GTATTATTTCATTTCTCGAAAGTCGAAACCCAGAAAAAATCACAAATTTCCCCCCAAATTTTCTTATCATCCAAACACCCTCTCCTTCCCCCTCTCTCTGGGGTTTTATTTGCATCCCTCATATCCCACACTTTCTCGCGCTTTCCTGGAAAAATTTTCACTTTCAAATCTTCAGCATGAGGCAATAGAAAGGTATGCCGCCTCATTGGGACCCGCCAACTCCGTTCGACTAGAGCTTCCAAAGGATTTCAATCGCCGCCGGTTCGGAGAAGGGGATATCTGTGATGAACAGCGATTTCGGATTGGACGGGAAATCGGATGCCACTGGAGAGGCCGAGGAAGCTAGAGCTAGGGTTTCCGAAGGCGGCGTCGGTGAAGATGGAGCTAGGGTTTCGCCAATGGAGCTCGATTCGGGGAGTGAGACTGGCGGAAGATCTGAGGAGGATAGGGCTAGGGTTAGTACGGAGAGTGAAGTTGGAAACGTAGATAAAGTGATGGAATCGAAGGGTTCTGGAATTCAGGTCGACAGAACTAGGGTGGAGGTTTCATTCAACGATGATGAAGATGATGTTTTCGACATTTCGCGGGTCGAAATTGATGACGATTCGGATAAATTTGAGGCTCACAGTGGTGAGCACCCGTCTTTGTTATCTGAGTTTGATGAGTTCGTGGCTAATGAGAAGAGTGGGATGGCGCTCGGAACCACGAGGGCGCTCAGCTACGGGTTCGAAGTGGGTGATATGGTGTGGGGGAAGGTAAAATCTCATCCGTGGTGGCCGGGGCACATATTTAACGAGGCGTTAGCAACGTCTCAGGTGCGGCGGACACGGAGGGAAGGTTATGTTTTGGTTGCCTTCTTTGGTGATAATAGTTACGGGTGGTTCGACCCGGCTGAACTCATACCATTTGATCCCCATTATGCTGAGAAATCTCGGCAGACAAGTCACAGGGGTTTTCTGAAGGCTGTGGAGGAGGCTGTTGATGAGGCGAATCGTAGGTGTGGAGTTGGTCTGGCTTGTAAATGTAGGAATGCCTATAATTTTCGGAGCACAAGTGTGCAAGGGTACTTTGTTGTTGATGTGCCGGATTATGAGCCAGGAGCAGTGTATTCGGAGAATCAGATTAGGAAGGCGAGGGATAGTTTTAAGCCGATTGAGATCCTGTCTTTTGTAAAGCAGTTGGCTTTGTCACCACTCGGTGATGATCAGAAGAGCCTCAGCTTTAATAAGAGCAAGGCTACTGCTTTTTCGTTTCGCAAGGCTGTTTTTGAAGAGTATGATGAGACGTACGCTCAGGCATTTGGTGCGCATCCAGGACGCCCTTCTCGTACTCTAGCTCCAGCTCCAACACGAGCTGCTTTGAGTGGTCCCTTGGTGATTGCTGAAGTTCTGGGTGGGCGGAAGACTGCCACAAAACCGATGAAAGTCAAGGACCATTCAAAGAGAGACAAATACCTATTTAAGCGGAGAGATGAACCTGTGAACTCAAAAATCCACCAAACTAGCCAGGGCCAAGCTAGTTCCTCAGCCCCATCTGCTGTCTTGGAGGGACCAATAGCGTTAGCAGATGATAATTATATGTTACAAAAGAGGGTTCCAGATGTATCTGGAAAAGAAGCTGTAATCATTGATCAGGCACCAAATAGCTCTCTCACCACCCGAGATGTTACTGTTGATGCAAAGCCATCTCTTGCAAAGGGAAGGGGGGATCTGCAGGAAGTAAAAGAGGGAGATGGTGATGTAGGTCCTACAACTACAGGATATGTTGATTTATTGGGGGAGGGGACCAAGCAACGTACAGTAGATGGTACATCACAACCGTTAAAGCAGGAAGGTGAGGGTGTGTTTGAGGTTAAATACGAAGAGAGTGAAAAATTGTCTGGATCATTTGAAAATCTTCAACAACCTTCTAATTCTTTGAAAAAAGAGGAAGGAGGCTATGAACGTGGTGTTGGAGATCCTTTGCCAATTGAGGCAAAGAGTTTAGGTGGGAAGAAAGCTGCTGGTGGAGTGAAAAAACTGAAGGTTCTTAAACGGCCTGCAGAGGACTTGGACACCAAGGACTCTATGATGGGGGATAAAAAGAAGAAGAAAAAGAAACAGTTAAGTGCAGAAGCAAGCGTTAGAAATCAGCAGAAGCCTTTGACTTCTGGAAAGGTACTGCCCTCAGGGAGTAAAGAAGCAGGAAATGCCAACCATGTAGGTTTGGCTCCAAGAGAGGATACCCCAGTTGAACATAAGAAAGATGTCACTTCCAGTAGTAACTTGTCTGAATCTGTTGGAAAATTGCCAATTCATGTCTTGGAAAATGTGCAGCTTGAACTATCACAACTGGTAAGTGATTTGAAGGCCCTTGCCCTTGATCCTTTTCACGGTATTGAGACAAACAGCCCTACAATTGTTCGGCAGTTCTTTCTGCACTTCCGGTCCCTTGTCTACCAGAAAAGTTTGGTTCTGTCACCACCCTCAGAGACTGAACCTGTTGAAGGCCGCTCCTCTAAATCTTCATCTGGTGTCAAAGCCTCTGATATATCTCCTACTGAGCAAGTTAGAGATTTATCGTCCTCAAAGCCAGCAAAACCCATGTTCAGATCCGATGATCCTACCATTGCTGGGCGGAAACGTGCTCCATCTGACCGTCAAGGAGATATTGCAGCTAAGAGGAACAAGAAAATTACTGATATAAGAACATTGGCTGCAGAAAAGAAGGCCATTCAGAGACCTCCTATAGACTCCAAGCGTGTAGAGGCAAAGGAATCAGCAACACCGGTTATGCGGAAGTCACTCAAGCCAGGTTTTGCAAAGAAAGCGGACCTTGCATCAAAGGCAGTTGAGCCCACAATGCTGGTGTTGAAGTTCCCTCCCAAAATCTCTCTCCCATCACCTGCAGAACTGAAGGCAAAGTTTGCTCGATTTGGGCCTATGGATCAGTCTGGTCTCCGTGTCTTTTGGAAGTCCTCGACATGCCGGGTTGTCTTTCTGTACAAATCTGATGCACATGCAGCATTTAAGTTTGCTACCGCAAACAGCTCCCTTTTCGGCAACTTCAGTGTGAGGTGTCAAATTCGAGAAGTGGGTGAAGTTCCAGAGTTCGACAAGGGTGACAATCCCAGGGACACCCCACGGGCTAAGGATCCATTGGTTGGGCAATCACCAGCATTGGCATCGGCACTCAGACAGCAGCAGCGGCAGGCTCAACAGAGTGCAGTGCAGCTGAAGTCGATTCTGAAGAAGTCGTCGGGCGAGGAGTCGGCAGGAGGGCAGGTAACCGGTGGGAATGGAAATAGTAAAGGGACTGCACGTGTAAAATTCATGTTGGGTAGGGAAGAAACTAGTAGGACTACTACTTCTGATCAATTCATGATGCCTGGTAATAGAAATAACAACTTCAACAAGAACAACAACAGCGCTAGTTTTGCGGACGTCGACGGTGCACCGTCTTCTACTTCTTCCATTGCTATGGATTTTAATACCTCTAGGAACTTTCAAAAGGTCAATCCTCCTCCAACTTTTTCATCACCATTGCCTCCTCTCCTCCCAAATCCTCCTGGTCCACCTCCGCAATATGCAAACCCCCCACCCCATAGTAATTTTCCGCAGCATTCCGAAATGGCACCACCCAGAAATACTAGTCACAATCTTAACGCACCACCCACCGCATTTCCAAGCACACCCACCAGCACCGTCGATATTTCGCAGCAGATGCTTAGCTTGTTGATAAGTTGCAGCGACGTTGTATCCAACGTGCAGGGCTTGCTTGGCTATTTGCCGTACCATCCTCTTTGACGAAGAAGCCTCAAAAAATTATTACGCTATAAGCCCGCAACAACGAGATTTGAACACAGCGTAAGGCTCGAAAGCTGTTAGAGGGAGAGAAGCCAACGTTACAAAGCAAATTGTAGACTCAGCGTCAACTTTACATGTAGTTTTTGCAAGTTGAATACTCTATTGTACTGATGATATGATATTGATAGTGCCATCTTGTTTGCATTTTTTTGGTTAGGGTTGGTTTGCCTTTTGGTCCGTTGGCCAGAATACAGCATTCCGGCCAACGAAAAAGCTTTGTGTCCGAATGTCGTATTAGGCACCGGACACAAAAGGGGTTGGATGCTTTGTGTGTGCGCGAAAGTTTGTTCAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G27650.1	1	Tudor/PWWP/MBT superfamily protein
Prunus persica	Prupe.6G322700.1.p	1	Tudor/PWWP/MBT superfamily protein
Pyrus communis	PCP016859.1	1	-
Pyrus x bretschneideri	Pbr020400.1	1	-
Rosa multiflora	Rmu_sc0024960.1_g000002.1	1	-
Rosa multiflora	Rmu_sc0002169.1_g000047.1	0.992	-
Rubus occidentalis	Ro06_G15265	1	-
Fragaria vesca	mrna22501.1	1	Tudor/PWWP/MBT superfamily protein
Vitis vinifera	GSVIVT01031118001	1	Tudor/PWWP/MBT superfamily protein
Solanum lycopersicum	Solyc01g099360.2.1	1	Tudor/PWWP/MBT superfamily protein
Populus trichocarpa	Potri.005G026800.1	1	Tudor/PWWP/MBT superfamily protein
Nicotiana benthamiana	Niben101Scf00369g02010.1	1	PWWP domain-containing protein 2B
Nicotiana benthamiana	Niben101Scf05901g02004.1	0.876	PWWP domain-containing protein 2B
Oryza sativa	LOC_Os05g05660.1	1	"PWWP domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K17398	DNA (cytosine-5)-methyltransferase 3A	EC:2.1.1.37

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00855.13	PWWP	148	236	1.50E-20

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.79207
SRR5252888	dormant buds	no	dormant buds(0 month)	10.7201
SRR5252889	dormant buds	no	dormant buds(0 month)	10.3924
SRR5252886	dormant buds	no	dormant buds(1 months)	11.0853
SRR5252887	dormant buds	no	dormant buds(1 months)	9.44549
SRR5252884	dormant buds	no	dormant buds(2 months)	13.9896
SRR5252882	dormant buds	no	dormant buds(3 months)	14.0715
SRR5252883	dormant buds	no	dormant buds(3 months)	6.40364
SRR5252880	dormant buds	no	dormant buds(4 months)	10.8776
SRR5252881	dormant buds	no	dormant buds(4 months)	9.86618
SRR5252878	bud break	no	bud break	11.1578
SRR5252879	bud break	no	bud break	9.61583
SRR3744766	flower	no	mature	6.77688
SRR3744767	flower	no	mature	6.96934
SRR3744768	flower	no	mature	6.79718
SRR6308190	stigmas	no	open flowers	3.91899
SRR6308181	styles	no	open flowers	3.77069
SRR6308188	filaments	no	open flowers	3.5383
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.00778
SRR6308192	pollen	no	open flowers	4.69137
SRR6308191	petals	no	open flowers	2.45361
SRR6308194	sepals	no	open flowers	3.77592
SRR6308193	receptacles	no	open flowers	3.7648
SRR6308189	ovaries	no	open flowers	4.26385
SRR3384922	fruit	no	1 week after full bloom	2.3222
SRR3384921	fruit	no	2 week after full bloom	2.59605
SRR3384920	fruit	no	3 week after full bloom	3.68278
SRR3384919	fruit	no	4 week after full bloom	2.14532
SRR3384923	fruit	no	5 week after full bloom	2.31115
SRR3384918	fruit	no	6 week after full bloom	2.85667
SRR3384917	fruit	no	8 week after full bloom	2.97155
SRR3384916	fruit	no	10 week after full bloom	2.44596
SRR3384915	fruit	no	12 week after full bloom	3.01215
SRR3384914	fruit	no	14 week after full bloom	3.03592
SRR3384913	fruit	no	16 week after full bloom	2.114
SRR3384912	fruit	no	18 week after full bloom	3.33461
SRR3384911	fruit	no	19 week after full bloom	2.14568
SRR3384910	fruit	no	20 week after full bloom	2.78945
SRR768128	whole fruit	no	25 days post anthesis	6.54759
SRR768129	whole fruit	no	35 days post anthesis	3.88524
SRR768130	whole fruit	no	60 days post anthesis	6.17559
SRR768131	whole fruit	no	87 days post anthesis	4.77577
SRR7343308	immature fruit flesh	no	immature	2.47125
SRR7343309	immature fruit flesh	no	immature	2.35207
SRR6320494	ripe fruit flesh	no	mature	5.08505
SRR5405143	ripe fruit peel	no	mature	4.31036
SRR6320572	ripe fruit peel	no	mature	5.48472
SRR7403504	fruit	uninfected	mature	3.09223
SRR7403506	fruit	uninfected	mature	3.36717
SRR7403507	fruit	uninfected	mature	3.59948
SRR7403500	fruit	infected with penicillium expansum	mature	1.56009
SRR7403501	fruit	infected with penicillium expansum	mature	1.7465
SRR7403508	fruit	infected with penicillium expansum	mature	1.464
SRR7403502	fruit	infected with penicillium expansum	mature	2.64861
SRR7403503	fruit	infected with penicillium expansum	mature	2.04805
SRR7403505	fruit	infected with penicillium expansum	mature	2.34096
SRR1613973	Central seeds	no	20DAPF	2.10602
SRR1613974	Central seeds	no	20DAPF	2.03505
SRR1613975	Central seeds	no	20DAPF	2.20925
SRR1613976	Lateral seeds	no	20DAPF	2.55343
SRR1613977	Lateral seeds	no	20DAPF	2.2157
SRR1613978	Lateral seeds	no	20DAPF	2.40726
SRR3744786	stem	no	mature	8.22408
SRR3744787	stem	no	mature	7.41306
SRR3744772	stem	no	mature	8.12644
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.36478
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.75867
SRR1089478	leaf	Virus-free	plantlets	13.1982
SRR1089477	leaf	ASGV-infected	plantlets	10.1806
SRR767660	leaf	uninfected	fully developed	5.59755
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.46486
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.35662
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.963913
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.84633
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.1573
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.18302
SRR6308182	young leaf	no	immature leaves	5.13127
SRR3744769	leaf	no	mature	8.38016
SRR3744770	leaf	no	mature	8.67505
SRR3744771	leaf	no	mature	8.67305
SRR5405145	leaf	no	mature	8.22331
SRR6320561	leaf	no	mature	5.70743