Gene detail

Detail information of MD12G1238200 Annotation

Gene ID	Annotation
MD12G1238200	NIMA-related kinase 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0216

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1238200	mRNA	Chr12	31152202	31157530	+

Sequences

CDS:

MD12G1238200

TTTAGCCATGTAGTCTCTCTCTCTCTCTCTCTTCTTTCTCTCTCTTCTTTCTTAAGAACTTGACAGTTTGTCTATTAAGAAGTCGAGGGTAAAAACCCAAATGGGAATGGGGGAAAGAACTACTGCAACTTCCTCTGCAGCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTTTTTTGCTCCCTGCTCTACTGGTCCAGTGACGACGTCGTTTTCAGCTCATTCTCCCCTGCCGCCAGCCAAAATGTGTCCTCCCTCACCTGCATTGTGATCTCTTCGATCCAACTCACTCACTCTACATTGAGTGAAGATAAGTTTTGAGTCTACAACATGGAGCAATATGAAGTTCTTGAGCAAATCGGTAAAGGGGCTTTCGGTTCTGCGCTTCTTGTCAGGCATAAGCATGAAAAGAAGAAGTACGTGTTGAAAAAGATTCGTCTTGCTCGCCAGACTGATAGATCGCGGAGATCTGCACACCAGGAGATGGAGCTCATTTCCAAGTTCAAAAATCCATTTATTGTGGAGTACAAAGATTCTTGGGTGGAAAAGGGTTGCTATGTGTGCATTATCATCGGTTATTGCGCAGGAGGGGACATGGCAGAAGCTATAAAAAAGGCCAATGGTCTTCTTTTCCCTGAAGAGAAGCTCTGTAAGTGGCTTGTCCAACTTCTGATGGCGCTAGACTACTTGCACAGGAATCATATTCTTCATCGTGATGTCAAGTGTTCTAATATATTCTTGACAAAAGATCAAGACATACGCCTTGGTGACTTTGGACTTGCCAAAATGTTGACTTCAGACGATCTTGCCTCTTCGGTTGTCGGAACTCCTAGCTATATGTGTCCTGAGCTTCTTGCTGATATACCTTATGGTTCAAAATCAGATATTTGGTCTTTGGGATGCTGTATGTATGAAATGACTTCTCATAGGGCTGCATTTAAAGCGTTTGATATACAAGCACTGATTAACAAAATTAACAGGTCCATAGTGGCTCCCCTTCCCACAAAGTACACTGGTGCATTCCGAAGCCTTATTAAAAGCATGCTTCGGAAAAACCCAGAACTCAGGCCAAGTGCTGCTGAGCTGCTTGCTCACCCAGTCCTTCAGCCTCATGTTCACAAAGTTCATCTCAAACTCAATAACCCCAGACATGGAACTTTAGCGGTCAACTGGCCTGATACTGGTTACTTGAAGAAGACAAGGTTTTCAGAGCCAGAAGCAGTTCCTTTCTCCACTCGCCGTTACCAGGACAAGCTGCATACATTCAGCAATGATAGGACTTTAAATCCTAGTATATCTGGAGGACATTCTGTTGGTGGCACTGGAGCCTATAGAAAAGCAGCCATACGCAAGCAGCCAATTGCTTCCAAAACTTCAAATATCGTTAACAGTCGAGTTACTCCAGCAAAAGCTTCTGCCACTCCCAAGAGATTTATGGAGCCCAAGAATCGTGCATCGCTTCCCGTTTCACGCACACCGCAAAAGACAGTGAGTACAACTCGCAGAGCATCATTGCCATTAACAAGAGCTGCAACTCAACAGTCCCCTTTCTGGCCCAATGTTGGTGTTCTTCACTGTATTAAATCTCCTGACGTTTCTGTCAATTCCCCTCGAATTGACAGGATAGCTGAATTCCCATTAGCCTCATATGAAGAACAATTATACGAAGAACAGTTTCTGCCTATCCATAGAAACTCATCACCCTCAGTGCAAGGTTCGTCTGGTTCCCCCCACTCTGGTGACCGTTCAATGATGAAGGACAAATGCACCGTTCAGATAAGCGACAGAGCCTCTCGCAAACTTAGTTTCACAGGTGCATGGAAGGGAATTGAACCTGGCATGTTCAAAGCTGCACCAGACAATCAAAGCGATGAATGTTCGGATCAAAACGCAACTGCTGGAGCATCAAGCCGGACCTCATCAAACACGCGTCGCCAGCATTTTGACACCTCATCATTCCAGCAAAGGGCTGAAGCTTTAGAAGGGCTGCTCGAATTCAGTGCAAGATTGCTCCAGAACGAACGATATGACGAGCTTGGGGTGTTACTGAAGCCTTTTGGGCCAGGGAAGGTCTCTCCTAGGGAAACTGCTATTTGGTTGACTAAGAGCATCAAGCAAAATAATGTCGACCAGGATGATCAATTACAATGAGCGGTTGCAACATGTATAATATTTCCAACTCGATTAGTTTTTGTAGTTACGAGTTTTCGGTTTTCATTTTTCTCAAGAGGAATTAGGCTCCTAGGTAGATCCTGATTTTGCAGGTTATGATCTCAGAAAAGGAATTGATTCTCACCATGAATTCAACTTAGTTTGTATAACTGCGATGTCTTAATAGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCAAGAAATGGT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:4.1.6

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G341100.2.p	1	NIMA-related kinase 2
Prunus persica	Prupe.6G341100.1.p	0.921	NIMA-related kinase 2
Pyrus communis	PCP010680.1	1	-
Pyrus x bretschneideri	Pbr004383.1	1	-
Rosa multiflora	Rmu_sc0006510.1_g000022.1	1	-
Rubus occidentalis	Ro06_G08234	1	-
Fragaria vesca	mrna16529.1	1	NIMA-related kinase 2
Vitis vinifera	GSVIVT01021831001	1	NIMA-related kinase 2
Populus trichocarpa	Potri.005G051600.1	1	NIMA-related serine/threonine kinase 1
Populus trichocarpa	Potri.013G039000.1	0.673	NIMA-related serine/threonine kinase 1

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
K08857	NIMA (never in mitosis gene a)-related kinase 1/4/5	EC:2.7.11.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	4	258	1.50E-63

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.55265
SRR5252888	dormant buds	no	dormant buds(0 month)	2.75796
SRR5252889	dormant buds	no	dormant buds(0 month)	4.37827
SRR5252886	dormant buds	no	dormant buds(1 months)	4.15223
SRR5252887	dormant buds	no	dormant buds(1 months)	2.942
SRR5252884	dormant buds	no	dormant buds(2 months)	0.660709
SRR5252882	dormant buds	no	dormant buds(3 months)	2.94514
SRR5252883	dormant buds	no	dormant buds(3 months)	0.280807
SRR5252880	dormant buds	no	dormant buds(4 months)	5.07024
SRR5252881	dormant buds	no	dormant buds(4 months)	3.50715
SRR5252878	bud break	no	bud break	6.00158
SRR5252879	bud break	no	bud break	7.87249
SRR3744766	flower	no	mature	0.443565
SRR3744767	flower	no	mature	0.4945
SRR3744768	flower	no	mature	0.60231
SRR6308190	stigmas	no	open flowers	0.0588169
SRR6308181	styles	no	open flowers	0.303802
SRR6308188	filaments	no	open flowers	0.910942
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.0784418
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.324781
SRR6308194	sepals	no	open flowers	0.566514
SRR6308193	receptacles	no	open flowers	1.60654
SRR6308189	ovaries	no	open flowers	0.897946
SRR3384922	fruit	no	1 week after full bloom	7.40943
SRR3384921	fruit	no	2 week after full bloom	7.23687
SRR3384920	fruit	no	3 week after full bloom	7.52181
SRR3384919	fruit	no	4 week after full bloom	10.0746
SRR3384923	fruit	no	5 week after full bloom	6.72392
SRR3384918	fruit	no	6 week after full bloom	7.93486
SRR3384917	fruit	no	8 week after full bloom	6.5396
SRR3384916	fruit	no	10 week after full bloom	5.57327
SRR3384915	fruit	no	12 week after full bloom	4.13477
SRR3384914	fruit	no	14 week after full bloom	3.62986
SRR3384913	fruit	no	16 week after full bloom	2.60594
SRR3384912	fruit	no	18 week after full bloom	2.25448
SRR3384911	fruit	no	19 week after full bloom	1.06283
SRR3384910	fruit	no	20 week after full bloom	0.803472
SRR768128	whole fruit	no	25 days post anthesis	8.68231
SRR768129	whole fruit	no	35 days post anthesis	14.5526
SRR768130	whole fruit	no	60 days post anthesis	5.88937
SRR768131	whole fruit	no	87 days post anthesis	3.91484
SRR7343308	immature fruit flesh	no	immature	5.69736
SRR7343309	immature fruit flesh	no	immature	6.29173
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.226706
SRR6320572	ripe fruit peel	no	mature	0.340279
SRR7403504	fruit	uninfected	mature	0.0383114
SRR7403506	fruit	uninfected	mature	0.0809408
SRR7403507	fruit	uninfected	mature	0.0480518
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	3.83568
SRR1613974	Central seeds	no	20DAPF	4.16532
SRR1613975	Central seeds	no	20DAPF	4.24131
SRR1613976	Lateral seeds	no	20DAPF	3.24734
SRR1613977	Lateral seeds	no	20DAPF	3.38075
SRR1613978	Lateral seeds	no	20DAPF	3.60319
SRR3744786	stem	no	mature	0.361918
SRR3744787	stem	no	mature	0.326793
SRR3744772	stem	no	mature	0.356985
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.97554
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.72828
SRR1089478	leaf	Virus-free	plantlets	2.05889
SRR1089477	leaf	ASGV-infected	plantlets	1.7001
SRR767660	leaf	uninfected	fully developed	2.02181
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.213177
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.85793
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.0878477
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.511166
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.257756
SRR6308182	young leaf	no	immature leaves	7.67547
SRR3744769	leaf	no	mature	0.161019
SRR3744770	leaf	no	mature	0.219734
SRR3744771	leaf	no	mature	0.199548
SRR5405145	leaf	no	mature	2.12506
SRR6320561	leaf	no	mature	0.436099