Gene detail

Detail information of MD12G1260900 Annotation

Gene ID	Annotation
MD12G1260900	Zinc-binding dehydrogenase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0075	anchored component of plasma membrane leucocyanidin oxygenase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1260900	mRNA	Chr12	32717741	32729034	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G65560.1	1	Zinc-binding dehydrogenase family protein
Prunus persica	Prupe.6G365900.1.p	1	Zinc-binding dehydrogenase family protein
Pyrus communis	PCP039025.1	1	-
Rubus occidentalis	Ro06_G09270	1	-
Fragaria vesca	mrna21546.1	1	Zinc-binding dehydrogenase family protein
Vitis vinifera	GSVIVT01004005001	1	Zinc-binding dehydrogenase family protein
Populus trichocarpa	Potri.010G177700.1	1	Zinc-binding dehydrogenase family protein
Nicotiana benthamiana	Niben101Scf05848g03015.1	1	Zinc-binding dehydrogenase family protein LENGTH=350
Oryza sativa	LOC_Os01g66720.1	1	"NADP-dependent oxidoreductase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0008270	zinc ion binding	molecular_function
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K08070	2-alkenal reductase	EC:1.3.1.74

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	26.1734
SRR5252888	dormant buds	no	dormant buds(0 month)	23.3098
SRR5252889	dormant buds	no	dormant buds(0 month)	21.6267
SRR5252886	dormant buds	no	dormant buds(1 months)	19.2104
SRR5252887	dormant buds	no	dormant buds(1 months)	16.1927
SRR5252884	dormant buds	no	dormant buds(2 months)	10.0066
SRR5252882	dormant buds	no	dormant buds(3 months)	14.2084
SRR5252883	dormant buds	no	dormant buds(3 months)	10.3831
SRR5252880	dormant buds	no	dormant buds(4 months)	16.6559
SRR5252881	dormant buds	no	dormant buds(4 months)	17.3632
SRR5252878	bud break	no	bud break	27.1266
SRR5252879	bud break	no	bud break	45.1207
SRR3744766	flower	no	mature	7.92796
SRR3744767	flower	no	mature	8.79629
SRR3744768	flower	no	mature	8.5725
SRR6308190	stigmas	no	open flowers	18.5319
SRR6308181	styles	no	open flowers	24.0977
SRR6308188	filaments	no	open flowers	22.202
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.67974
SRR6308192	pollen	no	open flowers	10.1798
SRR6308191	petals	no	open flowers	13.9338
SRR6308194	sepals	no	open flowers	16.569
SRR6308193	receptacles	no	open flowers	42.6966
SRR6308189	ovaries	no	open flowers	28.0563
SRR3384922	fruit	no	1 week after full bloom	53.7873
SRR3384921	fruit	no	2 week after full bloom	60.9639
SRR3384920	fruit	no	3 week after full bloom	79.6896
SRR3384919	fruit	no	4 week after full bloom	76.689
SRR3384923	fruit	no	5 week after full bloom	76.0246
SRR3384918	fruit	no	6 week after full bloom	59.4877
SRR3384917	fruit	no	8 week after full bloom	39.7103
SRR3384916	fruit	no	10 week after full bloom	44.6656
SRR3384915	fruit	no	12 week after full bloom	44.877
SRR3384914	fruit	no	14 week after full bloom	36.8527
SRR3384913	fruit	no	16 week after full bloom	36.8579
SRR3384912	fruit	no	18 week after full bloom	32.3067
SRR3384911	fruit	no	19 week after full bloom	34.8592
SRR3384910	fruit	no	20 week after full bloom	22.1075
SRR768128	whole fruit	no	25 days post anthesis	79.1605
SRR768129	whole fruit	no	35 days post anthesis	86.8602
SRR768130	whole fruit	no	60 days post anthesis	47.8413
SRR768131	whole fruit	no	87 days post anthesis	56.0849
SRR7343308	immature fruit flesh	no	immature	62.6796
SRR7343309	immature fruit flesh	no	immature	74.0603
SRR6320494	ripe fruit flesh	no	mature	13.4235
SRR5405143	ripe fruit peel	no	mature	24.1965
SRR6320572	ripe fruit peel	no	mature	11.6402
SRR7403504	fruit	uninfected	mature	18.2882
SRR7403506	fruit	uninfected	mature	17.585
SRR7403507	fruit	uninfected	mature	19.5191
SRR7403500	fruit	infected with penicillium expansum	mature	3.10566
SRR7403501	fruit	infected with penicillium expansum	mature	2.8102
SRR7403508	fruit	infected with penicillium expansum	mature	2.75516
SRR7403502	fruit	infected with penicillium expansum	mature	4.57353
SRR7403503	fruit	infected with penicillium expansum	mature	4.26856
SRR7403505	fruit	infected with penicillium expansum	mature	3.14501
SRR1613973	Central seeds	no	20DAPF	57.7162
SRR1613974	Central seeds	no	20DAPF	56.0155
SRR1613975	Central seeds	no	20DAPF	51.3953
SRR1613976	Lateral seeds	no	20DAPF	54.1075
SRR1613977	Lateral seeds	no	20DAPF	54.2844
SRR1613978	Lateral seeds	no	20DAPF	52.9461
SRR3744786	stem	no	mature	13.6432
SRR3744787	stem	no	mature	15.1069
SRR3744772	stem	no	mature	12.6
SRX765691	seedling shoot apex	no	4-6 week old seedling	42.1278
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	52.5725
SRR1089478	leaf	Virus-free	plantlets	12.987
SRR1089477	leaf	ASGV-infected	plantlets	11.8841
SRR767660	leaf	uninfected	fully developed	17.5986
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	28.5194
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	19.6484
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	37.2255
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	18.0419
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	25.4414
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	17.1243
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	12.2036
SRR6308182	young leaf	no	immature leaves	49.0727
SRR3744769	leaf	no	mature	7.34375
SRR3744770	leaf	no	mature	6.71148
SRR3744771	leaf	no	mature	6.96976
SRR5405145	leaf	no	mature	9.03174
SRR6320561	leaf	no	mature	15.1568