Gene detail

Detail information of MD13G1196600 Annotation

Gene ID	Annotation
MD13G1196600	20S proteasome beta subunit D1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0262	E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] HECT protein ubiquitination involved in ubiquitin-dependent protein catabolic process 20S proteasome subunit beta 4 [EC:3.4.25.1] negative regulation of flower development meristem determinacy histone H3-K27 methylation maintenance of floral organ identity ubiquitin-protein transferase activity threonine-type endopeptidase activity single-stranded DNA binding double-stranded DNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1196600	mRNA	Chr13	17078140	17081064	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G22630.1	1	PBD1;PRCGB\|20S proteasome beta subunit D1;
Pyrus communis	PCP041704.1	1	-
Pyrus x bretschneideri	Pbr025805.1	1	-
Rosa multiflora	Rmu_sc0004599.1_g000004.1	1	-
Rubus occidentalis	Ro04_G08548	1	-
Fragaria vesca	mrna20375.1	1	20S proteasome beta subunit D1
Vitis vinifera	GSVIVT01001182001	1	20S proteasome beta subunit D1
Populus trichocarpa	Potri.010G084800.1	1	20S proteasome beta subunit D1
Nicotiana benthamiana	Niben101Scf09547g02002.1	1	Proteasome subunit beta 2
Nicotiana benthamiana	Niben101Scf11609g01012.1	1	Proteasome subunit beta 1
Oryza sativa	LOC_Os03g48930.1	1	"peptidase, T1 family, putative, expressed"
Zea mays	GRMZM2G111566_P01	1	Proteasome subunit beta type
Zea mays	GRMZM2G097164_P01	0.842	Proteasome subunit beta type

Gene Ontology

GO term	Description	Category
GO:0005839	proteasome core complex	cellular component
GO:0051603	proteolysis involved in cellular protein catabolic process	biological_process
GO:0004298	threonine-type endopeptidase activity	molecular_function

KEGG

KO	Description	Enzyme
K02734	20S proteasome subunit beta 4	EC:3.4.25.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.22	Proteasome	3	182	2.90E-39

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	72.2908
SRR5252888	dormant buds	no	dormant buds(0 month)	11.3892
SRR5252889	dormant buds	no	dormant buds(0 month)	14.1592
SRR5252886	dormant buds	no	dormant buds(1 months)	14.5853
SRR5252887	dormant buds	no	dormant buds(1 months)	15.8764
SRR5252884	dormant buds	no	dormant buds(2 months)	10.1817
SRR5252882	dormant buds	no	dormant buds(3 months)	12.214
SRR5252883	dormant buds	no	dormant buds(3 months)	12.0002
SRR5252880	dormant buds	no	dormant buds(4 months)	10.7909
SRR5252881	dormant buds	no	dormant buds(4 months)	13.1974
SRR5252878	bud break	no	bud break	15.3259
SRR5252879	bud break	no	bud break	21.0779
SRR3744766	flower	no	mature	45.0133
SRR3744767	flower	no	mature	44.205
SRR3744768	flower	no	mature	41.1443
SRR6308190	stigmas	no	open flowers	39.8293
SRR6308181	styles	no	open flowers	44.8025
SRR6308188	filaments	no	open flowers	59.2416
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	37.3184
SRR6308192	pollen	no	open flowers	8.34685
SRR6308191	petals	no	open flowers	38.0379
SRR6308194	sepals	no	open flowers	42.9092
SRR6308193	receptacles	no	open flowers	64.4166
SRR6308189	ovaries	no	open flowers	54.0388
SRR3384922	fruit	no	1 week after full bloom	100.865
SRR3384921	fruit	no	2 week after full bloom	85.8428
SRR3384920	fruit	no	3 week after full bloom	66.2048
SRR3384919	fruit	no	4 week after full bloom	66.5287
SRR3384923	fruit	no	5 week after full bloom	60.4423
SRR3384918	fruit	no	6 week after full bloom	68.246
SRR3384917	fruit	no	8 week after full bloom	58.159
SRR3384916	fruit	no	10 week after full bloom	52.6906
SRR3384915	fruit	no	12 week after full bloom	47.7996
SRR3384914	fruit	no	14 week after full bloom	40.3406
SRR3384913	fruit	no	16 week after full bloom	41.3121
SRR3384912	fruit	no	18 week after full bloom	42.4071
SRR3384911	fruit	no	19 week after full bloom	49.3464
SRR3384910	fruit	no	20 week after full bloom	42.6176
SRR768128	whole fruit	no	25 days post anthesis	62.0709
SRR768129	whole fruit	no	35 days post anthesis	88.4143
SRR768130	whole fruit	no	60 days post anthesis	56.1057
SRR768131	whole fruit	no	87 days post anthesis	36.1537
SRR7343308	immature fruit flesh	no	immature	41.0354
SRR7343309	immature fruit flesh	no	immature	54.2808
SRR6320494	ripe fruit flesh	no	mature	38.4039
SRR5405143	ripe fruit peel	no	mature	31.7201
SRR6320572	ripe fruit peel	no	mature	74.1151
SRR7403504	fruit	uninfected	mature	38.3708
SRR7403506	fruit	uninfected	mature	35.2128
SRR7403507	fruit	uninfected	mature	39.0741
SRR7403500	fruit	infected with penicillium expansum	mature	46.5662
SRR7403501	fruit	infected with penicillium expansum	mature	40.0281
SRR7403508	fruit	infected with penicillium expansum	mature	45.7962
SRR7403502	fruit	infected with penicillium expansum	mature	43.1767
SRR7403503	fruit	infected with penicillium expansum	mature	44.0099
SRR7403505	fruit	infected with penicillium expansum	mature	40.674
SRR1613973	Central seeds	no	20DAPF	81.1644
SRR1613974	Central seeds	no	20DAPF	77.1264
SRR1613975	Central seeds	no	20DAPF	89.1186
SRR1613976	Lateral seeds	no	20DAPF	78.759
SRR1613977	Lateral seeds	no	20DAPF	92.4981
SRR1613978	Lateral seeds	no	20DAPF	82.899
SRR3744786	stem	no	mature	41.807
SRR3744787	stem	no	mature	45.1314
SRR3744772	stem	no	mature	46.6992
SRX765691	seedling shoot apex	no	4-6 week old seedling	47.926
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	60.1599
SRR1089478	leaf	Virus-free	plantlets	46.0406
SRR1089477	leaf	ASGV-infected	plantlets	39.6042
SRR767660	leaf	uninfected	fully developed	37.5831
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	66.2381
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	56.0636
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	110.266
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	62.3437
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	33.0239
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	45.6174
SRR6308182	young leaf	no	immature leaves	72.809
SRR3744769	leaf	no	mature	41.3082
SRR3744770	leaf	no	mature	41.4349
SRR3744771	leaf	no	mature	39.8303
SRR5405145	leaf	no	mature	26.8836
SRR6320561	leaf	no	mature	32.475