Gene detail

Detail information of MD13G1207900 Annotation

Gene ID	Annotation
MD13G1207900	ureidoglycolate amidohydrolase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0787	ureidoglycolate amidohydrolase [EC:3.5.1.116] ureidoglycolate hydrolase activity RNA splicing methionine biosynthetic process allantoin catabolic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1207900	mRNA	Chr13	19064588	19068959	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G43600.1	1	ATAAH-2;UAH\|ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2;ureidoglycolate amidohydrolase
Prunus persica	Prupe.1G031400.1.p	1	ureidoglycolate amidohydrolase
Pyrus communis	PCP026111.1	1	-
Pyrus x bretschneideri	Pbr011782.3	1	-
Rosa multiflora	Rmu_sc0001380.1_g000018.1	1	-
Rosa multiflora	Rmu_sc0000171.1_g000034.1	0.65	-
Rubus occidentalis	Ro04_G12474	1	-
Fragaria vesca	mrna32555.1	1	ureidoglycolate amidohydrolase
Vitis vinifera	GSVIVT01018124001	1	ureidoglycolate amidohydrolase
Solanum lycopersicum	Solyc09g083410.2.1	1	ureidoglycolate amidohydrolase
Populus trichocarpa	Potri.010G076100.1	1	ureidoglycolate amidohydrolase
Oryza sativa	LOC_Os12g40550.1	1	"peptidase, putative, expressed"
Zea mays	GRMZM2G130034_P01	1	ureidoglycolate amidohydrolase

Gene Ontology

GO term	Description	Category
GO:0008152	metabolic process	biological_process
GO:0016787	hydrolase activity	molecular_function

KEGG

KO	Description	Enzyme
K18151	ureidoglycolate amidohydrolase	EC:3.5.1.116

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	63.9375
SRR5252888	dormant buds	no	dormant buds(0 month)	47.7875
SRR5252889	dormant buds	no	dormant buds(0 month)	39.7166
SRR5252886	dormant buds	no	dormant buds(1 months)	30.8174
SRR5252887	dormant buds	no	dormant buds(1 months)	36.0282
SRR5252884	dormant buds	no	dormant buds(2 months)	33.7524
SRR5252882	dormant buds	no	dormant buds(3 months)	38.603
SRR5252883	dormant buds	no	dormant buds(3 months)	51.7717
SRR5252880	dormant buds	no	dormant buds(4 months)	38.1309
SRR5252881	dormant buds	no	dormant buds(4 months)	35.1418
SRR5252878	bud break	no	bud break	44.9654
SRR5252879	bud break	no	bud break	45.061
SRR3744766	flower	no	mature	20.9477
SRR3744767	flower	no	mature	20.4359
SRR3744768	flower	no	mature	19.9171
SRR6308190	stigmas	no	open flowers	65.6022
SRR6308181	styles	no	open flowers	43.6316
SRR6308188	filaments	no	open flowers	31.3219
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	18.6838
SRR6308192	pollen	no	open flowers	10.7406
SRR6308191	petals	no	open flowers	22.2582
SRR6308194	sepals	no	open flowers	27.0481
SRR6308193	receptacles	no	open flowers	37.364
SRR6308189	ovaries	no	open flowers	34.0828
SRR3384922	fruit	no	1 week after full bloom	24.2314
SRR3384921	fruit	no	2 week after full bloom	28.2852
SRR3384920	fruit	no	3 week after full bloom	32.9867
SRR3384919	fruit	no	4 week after full bloom	32.9226
SRR3384923	fruit	no	5 week after full bloom	29.796
SRR3384918	fruit	no	6 week after full bloom	24.1426
SRR3384917	fruit	no	8 week after full bloom	21.3873
SRR3384916	fruit	no	10 week after full bloom	21.8707
SRR3384915	fruit	no	12 week after full bloom	21.8039
SRR3384914	fruit	no	14 week after full bloom	20.8678
SRR3384913	fruit	no	16 week after full bloom	20.309
SRR3384912	fruit	no	18 week after full bloom	18.8535
SRR3384911	fruit	no	19 week after full bloom	22.7142
SRR3384910	fruit	no	20 week after full bloom	23.147
SRR768128	whole fruit	no	25 days post anthesis	39.0006
SRR768129	whole fruit	no	35 days post anthesis	39.2747
SRR768130	whole fruit	no	60 days post anthesis	25.8871
SRR768131	whole fruit	no	87 days post anthesis	22.8103
SRR7343308	immature fruit flesh	no	immature	30.1026
SRR7343309	immature fruit flesh	no	immature	31.1264
SRR6320494	ripe fruit flesh	no	mature	15.9895
SRR5405143	ripe fruit peel	no	mature	23.3559
SRR6320572	ripe fruit peel	no	mature	9.78852
SRR7403504	fruit	uninfected	mature	18.4777
SRR7403506	fruit	uninfected	mature	19.2471
SRR7403507	fruit	uninfected	mature	18.4952
SRR7403500	fruit	infected with penicillium expansum	mature	10.7751
SRR7403501	fruit	infected with penicillium expansum	mature	6.81058
SRR7403508	fruit	infected with penicillium expansum	mature	11.2425
SRR7403502	fruit	infected with penicillium expansum	mature	12.2129
SRR7403503	fruit	infected with penicillium expansum	mature	11.0602
SRR7403505	fruit	infected with penicillium expansum	mature	11.2121
SRR1613973	Central seeds	no	20DAPF	36.2307
SRR1613974	Central seeds	no	20DAPF	35.54
SRR1613975	Central seeds	no	20DAPF	30.2957
SRR1613976	Lateral seeds	no	20DAPF	40.876
SRR1613977	Lateral seeds	no	20DAPF	33.7479
SRR1613978	Lateral seeds	no	20DAPF	37.8806
SRR3744786	stem	no	mature	21.3179
SRR3744787	stem	no	mature	20.541
SRR3744772	stem	no	mature	20.676
SRX765691	seedling shoot apex	no	4-6 week old seedling	24.076
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	37.3757
SRR1089478	leaf	Virus-free	plantlets	22.9979
SRR1089477	leaf	ASGV-infected	plantlets	25.376
SRR767660	leaf	uninfected	fully developed	24.9585
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	16.8275
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	23.6998
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	18.6901
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	9.06628
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	23.1934
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	29.8496
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	26.0568
SRR6308182	young leaf	no	immature leaves	22.6336
SRR3744769	leaf	no	mature	20.4708
SRR3744770	leaf	no	mature	22.6235
SRR3744771	leaf	no	mature	22.3622
SRR5405145	leaf	no	mature	19.3506
SRR6320561	leaf	no	mature	22.5611