Gene detail

Detail information of MD13G1232300 Annotation

Gene ID	Annotation
MD13G1232300	transducin family protein / WD-40 repeat family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0261	nucleotide biosynthetic process post-embryonic organ development leucine-tRNA ligase activity regulation of auxin polar transport leucyl-tRNA aminoacylation lateral root formation root meristem growth cytosol spermidine biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1232300	mRNA	Chr13	23086572	23095910	-

Sequences

CDS:

MD13G1232300

CCCTAATCCCTAACCCCTTCCCCCGTCTCAGTCCCTCCTCGCTGCTTGGCGTCTCCATTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTAGTTGTTGGCTTTCGGCAAGCTCCAGAAACCCCTAATAAGATATAAAGAGAGAGGAATGGGAATATTCGAGCCGTTCAGAGCAATCGGCTACACAACCAGCTCCGTGCCCTTCTCTGTTCAGCGCCTCGGCACCGAAACCTTCGTCACTGTCTCCGTCGGCAAGGCCTTCCAAATTTACAACTGTGCAAAGCTCAGTCTCGTCCTCGTTGGTCCACAATTGCCAAAGAAGATTCGAGCTCTTGCTTCCTACCGTGATTATACATTTGCTGCATATGGGAATGAGATAGCCATTTTTAAGCGAGCTCATCAGGCAGCAACATGGAGCAGCCATAATGCCAAGGTCATTTCTTTGCTATTGTTTGGAGAGCATATCCTAAGTGTTGATGTTGAAGGTAATCTGTTTATATGGGCATTCAAAGGAATTGAGGAGAACCTTACTCCGATCGGACATGTTATGTTAGCCAACAACTTTAGTCCTAGCTGTATAATGCATCCGGATACCTACCTAAATAAGATTATTATTGGGAGTCAGGAAGGTTCTCTTCAACTTTGGAACATCAGTACAAAGAAAAAACTCTATGAGTTCAAGGGATGGAATTCTTCAATCTGCAGTTGTGTTTCATCTCCTGCACTAGATGTTGTTGCAGTTGGTTGTGCTGATGGAAATATTCATGTTCACAACATTCGTTACGATGAAGAGCTAGTCACATTTTCTCATTCGGCACGAGGTGCTGTGACTGCCTTATCTTTCAGCACAGATGGGAAGCCTCTTCTAGCATCTGGAGGTTCTTCTGGTATCATAAGCATATGGAATCTTGAAAAAAGAAGGCTTCAATCAGTAATAAGAGATGCCCATGATGGTTCCATACTATCACTTCACTTTCTTGTGAACGAACCCGTGCTAATGAGTTCATCATCTGACAATTCTATCAAAATGTGGATTTTTGACACAACTGATGGAGATCCTCGACTTTTACGATTCAGAAGTGGTCATAGTGCTCCTCCACGATGCATAAGGTTTTATGCGAATGGGAGACACATTCTATCGGCTGGTCAGGACCGTGCATTTCGCCTTTTCTCTGTAATGCAGGATCAGCAAAGTAGAGAGCTTTCTCAGCATCACATATCCAAACGAGCAAAGAAACTGAAGATGAAGGAAGAAGAGATAAAACTGAAGCCTGTCATCTCTTTTGACTGTGCTGAAATAAGAGAGCGAGATTGGTGCAATGTGGTTACATGCCATATGGATACTGCAGAGGCATATGTATGGAGACTTCAAAACTTTGTTCTTGGTGAGCATATTCTGAAGCCAAGACCAGAAAACCCCACACCAGTGAAGGCTTGTGCCATCAGTGCATGTGGCAATTTTGCTGTACTAGGGACAGTGGATGGTTGGGTTGAGCGGTTCAACCTCCAATCAGGAATCAGTCGAGGCAGTTACATGGACACGTCAGAAAGAAGAAGCTTTGCCCATGATGGGGAAGTGGTTGGAATTGCTTGTGATTCAACAAATACTCTAATGATAAGTGCAGGATATCATGGAGACATAAAGGTTTGGAATTTCAAGGGGCGTGATGTAAAATCTAGATGGGAAGTTGGGTGCTCTGTTGTCAAGATTGTATACAATCGTTTGAATGGTCTTTTGGCTGTTGTGGCCGATGACTTAATCATCCGTTTGTTTGATGTTGTGGCATCAAGAATGGTTCGTAAATTTGAAGGCCATACAGATCGTGTTACAGACATGTGTTTTAGTGAGGATGGGAAATGGCTTTTGTCATCAAGTATGGATGGAAGTCTTCGAGTCTGGGATGTTATTTTAGCAAGACAAATAGATGCGTTGCATGTTGACGTGTCTATAACAGCATTGTCTCTGTCACCGAATATGGATGTTCTAGCGACTGCTCATATCGACCAAAATGGGGTCTATCTTTGGGTAAATCAATCGATGTTTTGTGGAGCTTCAAAAGTTGATTCTTATGCAAAGGAAGTTAGGAGTGTTAAGTTGCCATCTATCTCTTCAACAAAAGGTTCTCAAGATGAGGACTCTGACGAGCCTATTGTGGACCATCCGCAGTCTAAGGATGCTCCTGCTTTTACAACTCTTGACCTGCAAATTCCAGATCTTGTTACTCTCTCATTATTGCCTAAAAGCCAGTGGCAAAGCTTAATCAATTTAGACACTATAAAGGAACGAAATAAACCAATTGAACCGCCAAAAAAACCTGAAAGGGCTCCTTTCTTTTTGCCTTCAATTCCCTCCTTTTCAGGAGAAATATTATTTAAGTCCACTGGATCAGAAAATGAGGAGGCCAAAGGTGATAACGTAGAAGACAATAGAATAAAATCTGGTCTGGCACCATCACAATTCTTGCAACATCTTCAGTCGTCCGCAGAAATGAAGAATTTTTCAGCATTTACCGACTATATCAAAAGTTTGTCTCCATCGACTCTGGATATGGAACTCCAAATGCTTCGGATTGTTGATGATGAGGAGGAAGAACATGAAAGCCGGCCAGAGTTGCTTTCAATCGAACTGCTTCTTGATTATTTTATACATGAGACTTCATGTAGAAACAATTTTGACTTTGTACAAGCTGTAATCAAGGTGTTTCTCAAGATCCATGGCGAAACAATTCGGTGCCAATCAAGACTGCAGGACAAGGCCCGGGAGTTCCTAGATATTCAATGCAAAACATGGCAAAGAGTAGAAAAACTGTTTCAAAGTACAAGTTGTGTGGTCGCTTTTCTTAGCAATTCACGGTTTTGAGTGGCCTGAAATTTTGTCTGTGTATTTCTGATTATCTAGATGTCCACCCCCAATTTTGTATTATCGTTTGTTCTCGGTTCCATGTAATCGATATTATTTCCGTCGAGACTTGGTTTCAGTGAAATTCGCCGATGTTTAACGAAACGCTGTAGATCATCTGTAAAATTCTGTTGATTTTTGGTCTTTTGATAGGATGGATCAAAAGAAAAATCAGGAGACGTAAATTAAGAAGAGTGCGGGT

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G063600.1.p	1	transducin family protein / WD-40 repeat family protein
Pyrus x bretschneideri	Pbr041265.1	1	-
Rosa multiflora	Rmu_sc0003239.1_g000008.1	1	-
Rubus occidentalis	Ro04_G12656	1	-
Fragaria vesca	mrna12205.1	1	transducin family protein / WD-40 repeat family protein
Vitis vinifera	GSVIVT01034133001	1	transducin family protein / WD-40 repeat family protein
Populus trichocarpa	Potri.006G078900.1	1	transducin family protein / WD-40 repeat family protein
Nicotiana benthamiana	Niben101Scf03253g00004.1	1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
Nicotiana benthamiana	Niben101Scf01516g00001.1	0.83	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
Oryza sativa	LOC_Os06g43690.1	1	"WD repeat-containing protein, putative, expressed"
Zea mays	GRMZM2G087712_P01	1	transducin family protein / WD-40 repeat family protein

Gene Ontology

GO term	Description	Category
GO:0032040	small-subunit processome	cellular component
GO:0006364	rRNA processing	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04192.8	Utp21	680	898	3.30E-60

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.38765
SRR5252888	dormant buds	no	dormant buds(0 month)	2.75344
SRR5252889	dormant buds	no	dormant buds(0 month)	3.07157
SRR5252886	dormant buds	no	dormant buds(1 months)	2.07271
SRR5252887	dormant buds	no	dormant buds(1 months)	2.51266
SRR5252884	dormant buds	no	dormant buds(2 months)	4.06769
SRR5252882	dormant buds	no	dormant buds(3 months)	4.90663
SRR5252883	dormant buds	no	dormant buds(3 months)	3.1539
SRR5252880	dormant buds	no	dormant buds(4 months)	5.22698
SRR5252881	dormant buds	no	dormant buds(4 months)	4.70246
SRR5252878	bud break	no	bud break	3.50735
SRR5252879	bud break	no	bud break	5.10467
SRR3744766	flower	no	mature	0.684834
SRR3744767	flower	no	mature	0.478377
SRR3744768	flower	no	mature	0.458326
SRR6308190	stigmas	no	open flowers	0.132509
SRR6308181	styles	no	open flowers	0.456519
SRR6308188	filaments	no	open flowers	0.683838
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.530411
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.31738
SRR6308194	sepals	no	open flowers	0.47279
SRR6308193	receptacles	no	open flowers	1.84781
SRR6308189	ovaries	no	open flowers	0.705277
SRR3384922	fruit	no	1 week after full bloom	0.877322
SRR3384921	fruit	no	2 week after full bloom	1.00551
SRR3384920	fruit	no	3 week after full bloom	0.590245
SRR3384919	fruit	no	4 week after full bloom	1.15876
SRR3384923	fruit	no	5 week after full bloom	0.864291
SRR3384918	fruit	no	6 week after full bloom	0.577281
SRR3384917	fruit	no	8 week after full bloom	0.486176
SRR3384916	fruit	no	10 week after full bloom	0.947374
SRR3384915	fruit	no	12 week after full bloom	1.09423
SRR3384914	fruit	no	14 week after full bloom	0.880062
SRR3384913	fruit	no	16 week after full bloom	0.457308
SRR3384912	fruit	no	18 week after full bloom	0.915542
SRR3384911	fruit	no	19 week after full bloom	0.521379
SRR3384910	fruit	no	20 week after full bloom	0.687537
SRR768128	whole fruit	no	25 days post anthesis	1.24507
SRR768129	whole fruit	no	35 days post anthesis	0.854545
SRR768130	whole fruit	no	60 days post anthesis	1.08887
SRR768131	whole fruit	no	87 days post anthesis	0.819603
SRR7343308	immature fruit flesh	no	immature	1.5231
SRR7343309	immature fruit flesh	no	immature	1.51892
SRR6320494	ripe fruit flesh	no	mature	2.34398
SRR5405143	ripe fruit peel	no	mature	1.61057
SRR6320572	ripe fruit peel	no	mature	1.2784
SRR7403504	fruit	uninfected	mature	1.09061
SRR7403506	fruit	uninfected	mature	1.34913
SRR7403507	fruit	uninfected	mature	1.31389
SRR7403500	fruit	infected with penicillium expansum	mature	0.25962
SRR7403501	fruit	infected with penicillium expansum	mature	0.550386
SRR7403508	fruit	infected with penicillium expansum	mature	0.317415
SRR7403502	fruit	infected with penicillium expansum	mature	0.674872
SRR7403503	fruit	infected with penicillium expansum	mature	0.65099
SRR7403505	fruit	infected with penicillium expansum	mature	1.17032
SRR1613973	Central seeds	no	20DAPF	2.95274
SRR1613974	Central seeds	no	20DAPF	3.25533
SRR1613975	Central seeds	no	20DAPF	2.72531
SRR1613976	Lateral seeds	no	20DAPF	2.35476
SRR1613977	Lateral seeds	no	20DAPF	2.1076
SRR1613978	Lateral seeds	no	20DAPF	2.56643
SRR3744786	stem	no	mature	1.52645
SRR3744787	stem	no	mature	1.21905
SRR3744772	stem	no	mature	1.35484
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.82767
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.13947
SRR1089478	leaf	Virus-free	plantlets	1.59327
SRR1089477	leaf	ASGV-infected	plantlets	1.58348
SRR767660	leaf	uninfected	fully developed	0.909577
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.12127
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.77103
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.18668
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.07462
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.837439
SRR6308182	young leaf	no	immature leaves	4.56206
SRR3744769	leaf	no	mature	0.5891
SRR3744770	leaf	no	mature	0.693233
SRR3744771	leaf	no	mature	0.644498
SRR5405145	leaf	no	mature	1.59192
SRR6320561	leaf	no	mature	1.04725