Detail information of MD14G1049600 Annotation
Gene IDAnnotation
MD14G1049600Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM0656neuroblastoma-amplified sequence
GT41
DDB1
protein N-acetylglucosaminyltransferase activity
splicing factor 3B subunit 3
nuclear periphery
nuclear-transcribed mRNA catabolic process
protein glycosylation

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD14G1049600mRNAChr1447571804767736+

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
Ubiquitin FamilyDDB1

Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Arabidopsis thalianaAT3G11960.11Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Arabidopsis thalianaAT3G11960.20.813Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Prunus persicaPrupe.7G085900.1.p1Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Pyrus communisPCP029829.11-
Pyrus x bretschneideriPbr026201.11-
Rosa multifloraRmu_sc0005420.1_g000008.11-
Rubus occidentalisRo06_G218311-
Fragaria vescamrna18083.11Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Vitis viniferaGSVIVT010334280011Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Solanum lycopersicumSolyc10g080630.1.11Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Populus trichocarpaPotri.006G197200.11Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Nicotiana benthamianaNiben101Scf13002g01015.11Splicing factor 3B subunit 3
Nicotiana benthamianaNiben101Scf01669g03006.10.849Splicing factor 3B subunit 3
Oryza sativaLOC_Os07g10390.11"cleavage and polyadenylation specificity factor, putative,expressed"
Zea maysGRMZM2G091449_P011Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Gene Ontology
GO termDescriptionCategory
GO:0005634nucleuscellular component
GO:0003676nucleic acid bindingmolecular_function

KEGG
KODescriptionEnzyme
K12830splicing factor 3B subunit 3-

Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
PF10433.5MMS1_N1086743.90E-105


Expression pattern
TOP