Gene detail

Detail information of MD14G1077300 Annotation

Gene ID	Annotation
MD14G1077300	S-formylglutathione hydrolase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0113	COPII vesicle coat protein transport protein SEC24 intracellular protein transport ER to Golgi vesicle-mediated transport S-formylglutathione hydrolase [EC:3.1.2.12] S-formylglutathione hydrolase activity nucleoside-triphosphatase activity cytoplasmic MED15SUB ER body organization

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1077300	mRNA	Chr14	8778374	8782606	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G41530.1	1	ATSFGH;SFGH\|ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE;S-formylglutathione hydrolase
Prunus persica	Prupe.7G053400.1.p	1	S-formylglutathione hydrolase
Pyrus communis	PCP001018.1	1	-
Pyrus x bretschneideri	Pbr002058.1	1	-
Rosa multiflora	Rmu_sc0000555.1_g000009.1	1	-
Rubus occidentalis	Ro06_G23402	1	-
Fragaria vesca	mrna21972.1	1	S-formylglutathione hydrolase
Vitis vinifera	GSVIVT01033232001	1	S-formylglutathione hydrolase
Solanum lycopersicum	Solyc04g016360.2.1	1	S-formylglutathione hydrolase
Populus trichocarpa	Potri.006G047000.1	1	S-formylglutathione hydrolase
Nicotiana benthamiana	Niben101Scf04411g01004.1	1	S-formylglutathione hydrolase
Oryza sativa	LOC_Os01g71300.2	1	"S-formylglutathione hydrolase, putative, expressed"
Zea mays	GRMZM2G046558_P01	1	Esterase D;

Gene Ontology

GO term	Description	Category
GO:0046294	formaldehyde catabolic process	biological_process
GO:0004091	carboxylesterase activity	molecular_function
GO:0018738	S-formylglutathione hydrolase activity	molecular_function

KEGG

KO	Description	Enzyme
K01070	S-formylglutathione hydrolase	EC:3.1.2.12

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00756.16	Esterase	25	276	1.80E-59

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	46.9905
SRR5252888	dormant buds	no	dormant buds(0 month)	59.1374
SRR5252889	dormant buds	no	dormant buds(0 month)	70.8845
SRR5252886	dormant buds	no	dormant buds(1 months)	39.2833
SRR5252887	dormant buds	no	dormant buds(1 months)	49.1705
SRR5252884	dormant buds	no	dormant buds(2 months)	42.0276
SRR5252882	dormant buds	no	dormant buds(3 months)	47.6977
SRR5252883	dormant buds	no	dormant buds(3 months)	65.2706
SRR5252880	dormant buds	no	dormant buds(4 months)	46.3375
SRR5252881	dormant buds	no	dormant buds(4 months)	49.7651
SRR5252878	bud break	no	bud break	45.5234
SRR5252879	bud break	no	bud break	27.249
SRR3744766	flower	no	mature	31.9353
SRR3744767	flower	no	mature	30.9297
SRR3744768	flower	no	mature	31.7638
SRR6308190	stigmas	no	open flowers	45.342
SRR6308181	styles	no	open flowers	46.8851
SRR6308188	filaments	no	open flowers	53.9346
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	14.9615
SRR6308192	pollen	no	open flowers	2.84529
SRR6308191	petals	no	open flowers	33.3473
SRR6308194	sepals	no	open flowers	37.1322
SRR6308193	receptacles	no	open flowers	54.4266
SRR6308189	ovaries	no	open flowers	57.0142
SRR3384922	fruit	no	1 week after full bloom	74.182
SRR3384921	fruit	no	2 week after full bloom	67.4498
SRR3384920	fruit	no	3 week after full bloom	94.601
SRR3384919	fruit	no	4 week after full bloom	81.9105
SRR3384923	fruit	no	5 week after full bloom	99.3891
SRR3384918	fruit	no	6 week after full bloom	83.8794
SRR3384917	fruit	no	8 week after full bloom	78.8699
SRR3384916	fruit	no	10 week after full bloom	87.6085
SRR3384915	fruit	no	12 week after full bloom	104.118
SRR3384914	fruit	no	14 week after full bloom	81.6318
SRR3384913	fruit	no	16 week after full bloom	64.8587
SRR3384912	fruit	no	18 week after full bloom	64.9792
SRR3384911	fruit	no	19 week after full bloom	61.376
SRR3384910	fruit	no	20 week after full bloom	45.0908
SRR768128	whole fruit	no	25 days post anthesis	76.7397
SRR768129	whole fruit	no	35 days post anthesis	102.477
SRR768130	whole fruit	no	60 days post anthesis	80.9008
SRR768131	whole fruit	no	87 days post anthesis	56.8186
SRR7343308	immature fruit flesh	no	immature	42.9782
SRR7343309	immature fruit flesh	no	immature	59.9843
SRR6320494	ripe fruit flesh	no	mature	39.6814
SRR5405143	ripe fruit peel	no	mature	44.1719
SRR6320572	ripe fruit peel	no	mature	81.8158
SRR7403504	fruit	uninfected	mature	30.3588
SRR7403506	fruit	uninfected	mature	33.4601
SRR7403507	fruit	uninfected	mature	31.473
SRR7403500	fruit	infected with penicillium expansum	mature	2.87062
SRR7403501	fruit	infected with penicillium expansum	mature	3.94439
SRR7403508	fruit	infected with penicillium expansum	mature	5.57322
SRR7403502	fruit	infected with penicillium expansum	mature	4.39685
SRR7403503	fruit	infected with penicillium expansum	mature	5.40202
SRR7403505	fruit	infected with penicillium expansum	mature	4.23776
SRR1613973	Central seeds	no	20DAPF	52.9278
SRR1613974	Central seeds	no	20DAPF	49.0092
SRR1613975	Central seeds	no	20DAPF	49.1003
SRR1613976	Lateral seeds	no	20DAPF	49.5683
SRR1613977	Lateral seeds	no	20DAPF	52.8062
SRR1613978	Lateral seeds	no	20DAPF	49.5861
SRR3744786	stem	no	mature	48.4127
SRR3744787	stem	no	mature	50.8825
SRR3744772	stem	no	mature	50.5103
SRX765691	seedling shoot apex	no	4-6 week old seedling	73.099
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	82.1108
SRR1089478	leaf	Virus-free	plantlets	73.0701
SRR1089477	leaf	ASGV-infected	plantlets	68.0377
SRR767660	leaf	uninfected	fully developed	69.1843
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	33.4138
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	54.8326
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	80.075
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	17.9997
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	53.3312
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	40.4195
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	48.7076
SRR6308182	young leaf	no	immature leaves	52.7631
SRR3744769	leaf	no	mature	49.8247
SRR3744770	leaf	no	mature	51.9845
SRR3744771	leaf	no	mature	48.1883
SRR5405145	leaf	no	mature	52.2312
SRR6320561	leaf	no	mature	74.5135