Gene detail

Detail information of MD14G1183300 Annotation

Gene ID	Annotation
MD14G1183300	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0058	ubiquitin ligase complex regulation of seed germination U-box protein ubiquitination

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1183300	mRNA	Chr14	27579870	27581927	-

Sequences

CDS:

MD14G1183300

ATGAATTGGAGATTTGATAGCGACGACCGCCGGATACTCATGTTTCCGGCGGTGCGCCCTTGCGAATGTATTTCTCCGGAGACCCTTCTCGACTCTCTGATCCCTCTCTCCCACACAATCTGCAATTTCCACTCGAAATGCTTCGCGACGCAACGGAAGAATAGCCGGGAAGCAATTCGCCTAGTTCGTGTTCTTCTCATGTTCTTTGAGGAGGCATGCGAGTGCAATTCGGCTCTTTCGAAATCTTCCGCTGTCCTCTGCTTCTCCGAGCTTCATTTCGTCTTCCAAAAAATCCGGTTTTTGTTGGAAGACTGCACGAGAGAAGGCGGTCGGATTTTGATGCTGACGAAATGCGAGTTTCTTGCTACCCAATTTCGGCTGCTGATTCGAGCTTTGGCGACGGCTCTTGATGTTTTTCCGTTGAAATTGATCGATGTTGGCGATGAAGTTAAGGAATTGGTTGAATTGGTGTCGAAGCAATCGTGGAAGGTCAAAATCGAGCTCGAAGCGGATGACGAATTGGCTTCGAAACGATTGCTTGCGATTCTGAGCCAATTCGAAAGGGGAATCGAGCCCGATTTGAATGCCGTAAAGCGGGTCCTCGATTACCTTCGAGTCAAAAGATGGAGCGACTGCAACATGGAGATCAAATTCTTGGAAGAAGAAATCGCTTTCAAGCGTTCCGATCGCGACGAGAGGGAGGTTCCTTTTCTCAGTAGCTTGGTGGGGTTCCTGAGCTACAGCAGGGGAGTGATCTTCGAAACATTGGATCATCAAAACGCTGCGAATCAAATCGATTCCAGGTGCAACGTGGAGATGTTTCGTTGCTTAAACCCTGAAGATTTCAAGTGCCCGATTTCTCTTGAGCTAATGCTTGATCCGGTGACTGTATCTACAGGTCAGACATACGATCGAAGTTCGATTCAGAAATGGCTCCGCGCCGGAAACATGCTCTGCCCCAAAACAGGAGAGGTGATCACAAACACAGAGTTGGTACCGAATTCGATTCTTCGCAAGCTACTAAAAAATCTTTGTGAATACAATGGCGTTTCTCTTGGCAGGCCAGGAACGCAAAGCTCCGACAAAGATCAAACGGTCGCGCATGGTAGCCCCGTTGCTAAACAAGCAATGAAGTTTCTCTCGAGATTTCTCAGCGGAAGGGTTGCTTGCGGAACAAGCGAACAGAAAAACAAGGCTGCTTATGAGATTCGGCTGCTAGCCAAATCAAACATTTTCAATAGGTCTTGTTTTATCAAGGCTGGCTCCATCCCTCCTCTGCTGAAACTACTGAATTCCGCGGATGCATCCACGCAAGTGAATGCAATCGCAGCCTTGTTGAAGCTCGCGAAATACGCAAGCGGAATGAAATTGATAATGTCATGGGGAGGACTACCATCAGTTGTTGCTGTTCTTAAAAATGGGTTGAGTTTAGAAGCCCGGCAATGCGCAGCTGCAACGATATTTCACCTCTCTTTGACAAGCCAGTATCGAAAACTAATTGGAGAATTACCTGAGGCCATCCCAGCTCTTGTGGAGCTGATCAGGGAAGGAACAACGTGTGGCAAAAAGAACTCCGTGGTTGCAATTCTCGGGCTGCTCCTTCGTGCCAAGAATCTACAAAAAGTGCTGGACGCAGGCATTGTTCCATTGCTAATTGACATAATATCTTCATCATCAGAAAACCCTGATCAGCTTGTTGATGATGCATTAGCAATTCTCGCAATTTTGGCCGAGAATGCGGTAGGATCACATGAAATCCTCTACGCCATTGATCTGCATTTGATCATCCGCATTCTTCAAACTTCGACATCCCAAAGAGCGAAAAAGTATTGTGTTTCAACATTGCTGTCTTTGTGCATCAATGGCGGGGCGGAAGTTGTTGCTGTTTTGGCGACGGAACCATCTCTAATGCCTAGACTGTTTTCGCTCTTGACTGATGGAACATCTCACTCGATCAATGAAGCGTCCTCCCTCATCAAATTTCTCCATAACTTCGGTGAAACTAGCGCACCGAGATGGATGAGTACTGCAGTTCGGCGCAAACAAAGCGTTCGGTAA

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	U-box

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.5G175800.1.p	1	ARM repeat superfamily protein
Pyrus communis	PCP000502.1	1	-
Rosa multiflora	Rmu_sc0001436.1_g000032.1	1	-
Rubus occidentalis	Ro05_G12144	1	-
Fragaria vesca	mrna32167.1	1	ARM repeat superfamily protein
Populus trichocarpa	Potri.015G074200.1	1	ARM repeat superfamily protein
Populus trichocarpa	Potri.012G078900.1	0.715	ARM repeat superfamily protein
Nicotiana benthamiana	Niben101Scf00802g00005.1	1	U-box domain-containing protein 19
Nicotiana benthamiana	Niben101Scf04296g00008.1	0.86	U-box domain-containing protein 19

Gene Ontology

GO term	Description	Category
GO:0004842	ubiquitin-protein transferase activity	molecular_function
GO:0000151	ubiquitin ligase complex	cellular component
GO:0016567	protein ubiquitination	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.11	U-box	279	340	6.20E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.198372
SRR5252888	dormant buds	no	dormant buds(0 month)	0.120041
SRR5252889	dormant buds	no	dormant buds(0 month)	0.556246
SRR5252886	dormant buds	no	dormant buds(1 months)	2.33816
SRR5252887	dormant buds	no	dormant buds(1 months)	5.02403
SRR5252884	dormant buds	no	dormant buds(2 months)	16.8232
SRR5252882	dormant buds	no	dormant buds(3 months)	60.2228
SRR5252883	dormant buds	no	dormant buds(3 months)	125.777
SRR5252880	dormant buds	no	dormant buds(4 months)	0.0863546
SRR5252881	dormant buds	no	dormant buds(4 months)	0.5751
SRR5252878	bud break	no	bud break	0.172024
SRR5252879	bud break	no	bud break	0.0953777
SRR3744766	flower	no	mature	1.06304
SRR3744767	flower	no	mature	0.882078
SRR3744768	flower	no	mature	0.884467
SRR6308190	stigmas	no	open flowers	0.20694
SRR6308181	styles	no	open flowers	0.415534
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.09303
SRR6308192	pollen	no	open flowers	35.0011
SRR6308191	petals	no	open flowers	0.380837
SRR6308194	sepals	no	open flowers	0.22144
SRR6308193	receptacles	no	open flowers	0.17661
SRR6308189	ovaries	no	open flowers	0.0957088
SRR3384922	fruit	no	1 week after full bloom	0.364507
SRR3384921	fruit	no	2 week after full bloom	0.131519
SRR3384920	fruit	no	3 week after full bloom	0.0386015
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.0545065
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0.0418899
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.634355
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.717526
SRR7343309	immature fruit flesh	no	immature	2.1474
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.39999
SRR6320572	ripe fruit peel	no	mature	0.398923
SRR7403504	fruit	uninfected	mature	0.607607
SRR7403506	fruit	uninfected	mature	0.641848
SRR7403507	fruit	uninfected	mature	0.705635
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0622217
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0482977
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.016636
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.338545
SRR1613977	Lateral seeds	no	20DAPF	0.117162
SRR1613978	Lateral seeds	no	20DAPF	0.200468
SRR3744786	stem	no	mature	0.407805
SRR3744787	stem	no	mature	0.348348
SRR3744772	stem	no	mature	0.310866
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.47095
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.00784375
SRR1089478	leaf	Virus-free	plantlets	35.0936
SRR1089477	leaf	ASGV-infected	plantlets	33.5735
SRR767660	leaf	uninfected	fully developed	4.03532
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.974822
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	13.812
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.43685
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	12.6097
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.54985
SRR3744770	leaf	no	mature	0.737075
SRR3744771	leaf	no	mature	0.784206
SRR5405145	leaf	no	mature	14.2857
SRR6320561	leaf	no	mature	10.5411