Gene detail

Detail information of MD14G1208200 Annotation

Gene ID	Annotation
MD14G1208200	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0476	condensin complex ATP binding microtubule motor activity ATP-dependent microtubule motor activity centromeric protein E microtubule-based movement telomere maintenance in response to DNA damage regulation of telomere maintenance response to gamma radiation meiotic chromosome segregation chromatin silencing by small RNA sister chromatid cohesion DNA rewinding phragmoplast microtubule organization phragmoplast assembly CPC ATP-dependent DNA helicase activity endonuclease activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1208200	mRNA	Chr14	29490510	29499160	+

Sequences

CDS:

MD14G1208200

ATGGAGATCACAGAAGAACAAAGAAGACGAGCCGAAGCGAATCGATTAGTAGCACTAGCGAAACGCAAAGCGCTGATCGAATCCGAATCCTCCAATCTTCAACAACAGCAGCAAAACCCATGGTCACTCTTCAAGTGCCGAAAGATTTCTCCCGACCTCACCCCAAGCTCCACGCATTGCATCCCCGATCCGAGACCCGAATTTTCCCGGGTCAAACCGGTTCCGGATATTCAATTTCCAGCGAGGTTCCGGGTCAGGCTCGAAATCTGCTCCCCGGACTCCTTCTCAGCCACCCCAGTTGCCGTAAAAGGGTTTGCATTTCCGGGGCAGGAGGAGTGCTTAAGGAGACTAAGTGATTGCTTGGCTAATGTCATGCCATCCCATTACACGCAAAATCATGGTGGTGGAAAGGCCGGTGTTTATAAGCTGAGTGATTACAGTGCGGTCTTGAAATGTCTAAGAAGCAGCAAGAGCATTGACACTGAAGAAATACCTTGGGGCACTCTTAATGTTGTAGAGAGACTTTCACATTCTTTTGTTGCGGGAAAATGGATACCATGCAGGCCAGAACACTTGTCAGACGAAATGGTTGATGAGTTCGTTGGGAAGCTACCGAAGAAGCTGTTAGATGCACTTTTGCCTTTCCAACATGAGGGTGTTAGATTTGGTTTGCAAAGAGGTGGACGATGTCTTATTGCAGACGAAATGGGCCTTGGAAAGACACTCCAGGCTATTGCTATTGCAAGCTGTTTCATGCATGAAGGTTCCATACTTGTTGTTTGCCCTGCCATTTTACGTTACTCTTGGGCAGAAGAACTAGAGCGGTGGCTTCCGTTTTGCTTGCCAGCTGACATCCATCTAGTATTTGGTCATGAAAACAATCCTGCCAATTTAAAGAGATGGCCTAGAGTTGTGGTTATTTCTTACACAATGCTCCACCGGTTGCATAAGAGCATGCTTGAACGAGAATGGGCTCTCTTAGTTGTTGATGAATCCCACCACGTACGATGTACCAAGAAATCATCAGAACCTAGAGAGATAAAAGCTGTTCTTGACATTGCAACAAAGGTCAAGCGCATAGTTTTACTATCTGGAACACCTTCTTTGTCAAGGCCGTATGACATTTTTCATCAGATAGATATGTTATGGCCTGGTTTGCTGGGAAAAGACAAGTATGACTTTGCCAAAACTTACTGTGATGTCAAATATATCCACGGTGTTCAAGGGAAAACTTTTCAGGATTTCTCTAAGGGCACTCGTTTGGAGGAGTTGAACATGTTACTGAAGCAAACGGTTATGATAAGACGCTTGAAGGAACATGTCCTGGTTCAGCTACCACCCAAACGCCGCCAGATTATACAAGTAGTACTGAAGAAATCAGATATAGCTTCAGCAATAGCTGCTGTCAGGGTGGGAAGAAGTGCCACTAAGAATGCATCTTCAGAAAATTTGGATGAACCAAATGATAGTGAGTGTTGCTGCAGATCAGGGCAACTTTCCTACCAAGAATTAGGTATTGCAAAGCTAGCCGGTTTTCGGGAATGGCTCTCCATTCATCCACTCATTGGAGAATCAGATGGTGTTGTAAACTTGGAATCAGATTCCAGTTCTCACAAAATGTTAATATTTGCGCATCACCATAAAGTACTTGACGGATTACAGGAGTTCATATGTGAGAAAGGGATTACTTTTGTCCGAATTGATGGAAATACACTTGCTGCAGATAGGCAGGAAGCTGTACGATCATTCCAACTATCTACCGAGGTCAAGATTGCAATAATTGGTATTACTGCTGGAGGTGTTGGCCTTGATTTCTCATCAGCAAAGCATGTTGTGTTCTTGGAGCTTCCTCAGTCTCCATCGTTGATGCTTCAGGCTGAGGATAGAGCTCACAGGAGAGGGCAAACAAATGCAGTCAACATATACATATTTTGCGGAAAGGATACTATAGACGAGTCACATTGGCAAAACTTGAACAAGAGTTTGCACCGTGTTTCATCTACAACGAACGGGAAGTATGATGCAATACAAGAGATACCGGTCGAAGGTATTTCTTTCTTTGAGACGTCAGGTGGAGCTGATACTTGTGAAGATCATATGTGGCAAAAGACAGTGGGTGATGAGTTCTCTGGAGAGTCAATAAAATTGTCTAACTTTGGCTGCTTAGCCAAATATATGATACCGGCGTATGATAAATTGGTTGCAAACATTCTACATGGATCTGCACAGCACAATGATAGTGATGGAATTTCATCCCAAACGCACAGTAGTACCAAGGCTCAAGTGGTTTTTGATTGCAATGGGGACAAGGGATGTTCAGAAGAGAACTTGGAAGGAGATGTTTCTACGAGCAGTGAAGACAAAGATGGACTTAAAAAGGAACACCAAAACAACTGTCAAGCAACCAAATCAAAGGACGCCGAACCAGTTCAGCCAATGGAAGCTAAAGAAAGTAGTACCAACCAAGTAGATGCTTTGCGATTTGAGGTGAGCCAATACACTGGTAGAATCCACTTGTATTCTTGCATCTCAAGAGAGGATTCAAGACCAAGGCCACTTTTTGAGAATTTTAGACCAGAAGAACTCGAGGCATTGAATTCTACTGCTGCTGACAATATTAAAGGAACTTCTTTCAAATTTTTGAAGGAGAATCCAGGTTATTTGCATGCTCTTCTTGCATTCATCAAAGAATGGAAGAAATTGAGGCCCATCGAACAAAAAAAATTACTTGGAAAGCCTTTGCAGCTTCCTTTGACTATTGAGTTGTGCTACCTGTGCGAAGGCATTAACCACGACATCAGGGGACTACTGAAAGGTGGAAGCAAGCGCCGCTCTACACCTTTTGTTGAGATCAGCAAACCTTTACCATCAAACACTGTGTGGAAAAAAGTCCACCTACGTAGTGGCTATGGAAAAAGGGAGAAGGAATACACTCAGGGTTTTACTCTGACTGATGATCCTTTGTGCAAACTGTGTCAAACACCATGCACGGGCCATAATGCCAAGACACCTGAATATTTTGAAGATCTGTTCTGCCAGCTTAGCTGCTACGAAGAATACCGCATCCGAACAAGTAACAGATCTCTTCGTCATGAGCTTTTTCAACTGGAACGTGGTGTCTGCACAATTTGCCAATTAGATTGTCATAAACTTGTTGAGCACCTAAGACCGTTATCCTTGGCAATGAGGAGGCAGTATATTGAAAATTTTGCGCCACGAGTGGCAACTCTGAAGAAACCGCTTGATAGGCTTGTTAAGGATCCGAAAGAGGGCAATGCATGGCATGCAGACCACTTTGTTCCTGTCTATCGAGGTGGAGGTGAATGCAGGCTCGAGAACATGAGAACACTTTGTGTGGCCTGTCATCGCGATGTTACTAAAGCACAATGTGCTGAACGGCTGTCAACAAGGATCCAGGCTAAGAAAAAACTGAAAGCAATCATGAACGACATTAAAAAGAAAGCTACGGAGACTAATCTAGCGGGCCCGGAACATATAGAGATTATGCAAGAGGATGCAATTGAGGATGAGCTTTTCGTCAAGGTTCCTGGGAGCGCCTACTCATTGGAAAATCGCTTGGATGCTACAACTACAGGCGAAGACTTGGACGAGCCCTCCAGTAGCAACAAGGTTCCAACGGTAGATAGCCATCTGTTAGGAGTATAATTCATGTATTTTTTCTTCGAATAGCAAATATTTTGATTTTTTTAGAACCTTTTGATGTCTAGGACTCAATTTCTGGACTTCAGATTGTTTAAGTTGAAGCTGCAGATTTAGGTAGTTTCAGTTGCCTTGTACTTGTCGTCGCCCGGCTGTATACGATACAAGCATTTCCACTGGAAATATAAAGCAATATTTGTACATTTATATAAAAGATTCAAACTTTTTGGTTTAA

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	SNF2
Epigenetic Regulators	CHR

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G07810.1	1	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Prunus persica	Prupe.5G200300.1.p	1	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Pyrus communis	PCP026071.1	1	-
Pyrus x bretschneideri	Pbr007244.1	1	-
Rosa multiflora	Rmu_sc0000003.1_g000001.1	1	-
Rubus occidentalis	Ro05_G03302	1	-
Vitis vinifera	GSVIVT01007916001	1	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Solanum lycopersicum	Solyc03g115520.2.1	1	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Populus trichocarpa	Potri.012G067000.1	1	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Nicotiana benthamiana	Niben101Scf02922g01033.1	1	Chromodomain-helicase-DNA-binding protein 1-like
Oryza sativa	LOC_Os07g40730.1	1	"SNF2 domain-containing protein, putative, expressed"
Zea mays	GRMZM2G313553_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0004386	helicase activity	molecular_function
GO:0004519	endonuclease activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.754688
SRR5252888	dormant buds	no	dormant buds(0 month)	1.38301
SRR5252889	dormant buds	no	dormant buds(0 month)	1.5557
SRR5252886	dormant buds	no	dormant buds(1 months)	1.57861
SRR5252887	dormant buds	no	dormant buds(1 months)	1.19066
SRR5252884	dormant buds	no	dormant buds(2 months)	0.561803
SRR5252882	dormant buds	no	dormant buds(3 months)	0.866859
SRR5252883	dormant buds	no	dormant buds(3 months)	0.94459
SRR5252880	dormant buds	no	dormant buds(4 months)	1.16793
SRR5252881	dormant buds	no	dormant buds(4 months)	1.17632
SRR5252878	bud break	no	bud break	3.48987
SRR5252879	bud break	no	bud break	3.46379
SRR3744766	flower	no	mature	0.501431
SRR3744767	flower	no	mature	0.617375
SRR3744768	flower	no	mature	0.686774
SRR6308190	stigmas	no	open flowers	0.661022
SRR6308181	styles	no	open flowers	0.50957
SRR6308188	filaments	no	open flowers	0.987259
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.464342
SRR6308192	pollen	no	open flowers	1.84144
SRR6308191	petals	no	open flowers	0.461246
SRR6308194	sepals	no	open flowers	0.446929
SRR6308193	receptacles	no	open flowers	1.09917
SRR6308189	ovaries	no	open flowers	0.628146
SRR3384922	fruit	no	1 week after full bloom	0.385433
SRR3384921	fruit	no	2 week after full bloom	0.878332
SRR3384920	fruit	no	3 week after full bloom	0.599374
SRR3384919	fruit	no	4 week after full bloom	0.392972
SRR3384923	fruit	no	5 week after full bloom	0.288778
SRR3384918	fruit	no	6 week after full bloom	0.35929
SRR3384917	fruit	no	8 week after full bloom	0.300313
SRR3384916	fruit	no	10 week after full bloom	0.212799
SRR3384915	fruit	no	12 week after full bloom	0.104909
SRR3384914	fruit	no	14 week after full bloom	0.30524
SRR3384913	fruit	no	16 week after full bloom	0.167777
SRR3384912	fruit	no	18 week after full bloom	0.269914
SRR3384911	fruit	no	19 week after full bloom	0.172586
SRR3384910	fruit	no	20 week after full bloom	0.13513
SRR768128	whole fruit	no	25 days post anthesis	1.68926
SRR768129	whole fruit	no	35 days post anthesis	0.645238
SRR768130	whole fruit	no	60 days post anthesis	0.135225
SRR768131	whole fruit	no	87 days post anthesis	0.373213
SRR7343308	immature fruit flesh	no	immature	0.23944
SRR7343309	immature fruit flesh	no	immature	0.358128
SRR6320494	ripe fruit flesh	no	mature	0.922254
SRR5405143	ripe fruit peel	no	mature	0.266353
SRR6320572	ripe fruit peel	no	mature	0.705114
SRR7403504	fruit	uninfected	mature	0.338559
SRR7403506	fruit	uninfected	mature	0.369559
SRR7403507	fruit	uninfected	mature	0.41048
SRR7403500	fruit	infected with penicillium expansum	mature	0.233339
SRR7403501	fruit	infected with penicillium expansum	mature	0.173135
SRR7403508	fruit	infected with penicillium expansum	mature	0.343232
SRR7403502	fruit	infected with penicillium expansum	mature	0.385991
SRR7403503	fruit	infected with penicillium expansum	mature	0.377231
SRR7403505	fruit	infected with penicillium expansum	mature	0.217983
SRR1613973	Central seeds	no	20DAPF	0.370975
SRR1613974	Central seeds	no	20DAPF	0.259047
SRR1613975	Central seeds	no	20DAPF	0.232574
SRR1613976	Lateral seeds	no	20DAPF	0.286405
SRR1613977	Lateral seeds	no	20DAPF	0.249252
SRR1613978	Lateral seeds	no	20DAPF	0.418683
SRR3744786	stem	no	mature	0.396084
SRR3744787	stem	no	mature	0.282306
SRR3744772	stem	no	mature	0.445069
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.36562
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.38617
SRR1089478	leaf	Virus-free	plantlets	0.39174
SRR1089477	leaf	ASGV-infected	plantlets	0.546963
SRR767660	leaf	uninfected	fully developed	0.477151
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.549458
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.207622
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.4055
SRR6308182	young leaf	no	immature leaves	3.14485
SRR3744769	leaf	no	mature	0.452872
SRR3744770	leaf	no	mature	0.464521
SRR3744771	leaf	no	mature	0.45664
SRR5405145	leaf	no	mature	1.11281
SRR6320561	leaf	no	mature	0.566846