Gene detail

Detail information of MD15G1017800 Annotation

Gene ID	Annotation
MD15G1017800	F-box family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0102	CCR4-NOT complex subunit CAF16

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1017800	mRNA	Chr15	1024483	1025560	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	F-box

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G509700.1.p	1	calreticulin 3

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.29	F-box	61	99	0.00019

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	1.25619
SRR5252889	dormant buds	no	dormant buds(0 month)	0.242538
SRR5252886	dormant buds	no	dormant buds(1 months)	1.06383
SRR5252887	dormant buds	no	dormant buds(1 months)	1.13064
SRR5252884	dormant buds	no	dormant buds(2 months)	0.225704
SRR5252882	dormant buds	no	dormant buds(3 months)	0.905474
SRR5252883	dormant buds	no	dormant buds(3 months)	0.740001
SRR5252880	dormant buds	no	dormant buds(4 months)	0.451835
SRR5252881	dormant buds	no	dormant buds(4 months)	0.626898
SRR5252878	bud break	no	bud break	0.225021
SRR5252879	bud break	no	bud break	0.374285
SRR3744766	flower	no	mature	0.870894
SRR3744767	flower	no	mature	1.10591
SRR3744768	flower	no	mature	0.735158
SRR6308190	stigmas	no	open flowers	0.353124
SRR6308181	styles	no	open flowers	0.454168
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.6422
SRR6308192	pollen	no	open flowers	4.03157
SRR6308191	petals	no	open flowers	0.778471
SRR6308194	sepals	no	open flowers	0.566049
SRR6308193	receptacles	no	open flowers	0.150434
SRR6308189	ovaries	no	open flowers	0.854787
SRR3384922	fruit	no	1 week after full bloom	0.211967
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0.101013
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.0926466
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.127004
SRR768129	whole fruit	no	35 days post anthesis	0.13947
SRR768130	whole fruit	no	60 days post anthesis	0.233834
SRR768131	whole fruit	no	87 days post anthesis	0.176009
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.35222
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.351966
SRR7403506	fruit	uninfected	mature	0.495734
SRR7403507	fruit	uninfected	mature	0.515025
SRR7403500	fruit	infected with penicillium expansum	mature	0.151612
SRR7403501	fruit	infected with penicillium expansum	mature	1.34993
SRR7403508	fruit	infected with penicillium expansum	mature	0.486578
SRR7403502	fruit	infected with penicillium expansum	mature	0.376196
SRR7403503	fruit	infected with penicillium expansum	mature	0.560241
SRR7403505	fruit	infected with penicillium expansum	mature	0.629486
SRR1613973	Central seeds	no	20DAPF	0.15697
SRR1613974	Central seeds	no	20DAPF	0.301958
SRR1613975	Central seeds	no	20DAPF	0.292825
SRR1613976	Lateral seeds	no	20DAPF	0.138606
SRR1613977	Lateral seeds	no	20DAPF	0.357411
SRR1613978	Lateral seeds	no	20DAPF	0.191508
SRR3744786	stem	no	mature	0.846449
SRR3744787	stem	no	mature	0.789111
SRR3744772	stem	no	mature	0.934565
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.164151
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.625096
SRR1089478	leaf	Virus-free	plantlets	0.808771
SRR1089477	leaf	ASGV-infected	plantlets	0.313678
SRR767660	leaf	uninfected	fully developed	1.2292
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.29488
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.861813
SRR3744770	leaf	no	mature	0.968348
SRR3744771	leaf	no	mature	1.22238
SRR5405145	leaf	no	mature	1.08476
SRR6320561	leaf	no	mature	0