Gene detail

Detail information of MD15G1152300 Annotation

Gene ID	Annotation
MD15G1152300	eukaryotic elongation factor 5A-1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0740	translational initiation translation initiation factor 1A translation initiation factor 5A translational frameshifting positive regulation of translational termination positive regulation of translational elongation translation initiation factor activity peptidyl-lysine modification to peptidyl-hypusine photoperiodism F-box and leucine-rich repeat protein 2/20 ribosome binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1152300	mRNA	Chr15	11279564	11281893	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G262400.1.p	1	eukaryotic elongation factor 5A-1
Pyrus communis	PCP019318.1	1	-
Pyrus x bretschneideri	Pbr034245.1	1	-
Pyrus x bretschneideri	Pbr007353.1	1	-
Rosa multiflora	Rmu_sc0023131.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0007631.1_g000002.1	1	-
Rosa multiflora	Rmu_sc0009759.1_g000010.1	1	-
Rubus occidentalis	Ro01_G05060	1	-
Fragaria vesca	mrna10075.1	1	eukaryotic elongation factor 5A-1
Vitis vinifera	GSVIVT01003867001	1	eukaryotic elongation factor 5A-1
Populus trichocarpa	Potri.006G185000.1	1	eukaryotic elongation factor 5A-1
Populus trichocarpa	Potri.018G107300.2	1	eukaryotic elongation factor 5A-1
Oryza sativa	LOC_Os07g02210.3	1	"eukaryotic translation initiation factor 5A, putative, expressed"
Oryza sativa	LOC_Os03g55150.6	1	"eukaryotic translation initiation factor 5A, putative, expressed"
Oryza sativa	LOC_Os07g40580.1	1	"eukaryotic translation initiation factor 5A, putative, expressed"
Zea mays	GRMZM2G144030_P01	1	protein_coding
Zea mays	GRMZM2G113696_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0045905	positive regulation of translational termination	biological_process
GO:0045901	positive regulation of translational elongation	biological_process
GO:0006452	translational frameshifting	biological_process
GO:0043022	ribosome binding	molecular_function
GO:0008612	peptidyl-lysine modification to peptidyl-hypusine	biological_process
GO:0003746	translation elongation factor activity	molecular_function

KEGG

KO	Description	Enzyme
K03263	translation initiation factor 5A	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01287.16	eIF-5a	85	154	3.50E-30

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	341.245
SRR5252888	dormant buds	no	dormant buds(0 month)	138.599
SRR5252889	dormant buds	no	dormant buds(0 month)	157.625
SRR5252886	dormant buds	no	dormant buds(1 months)	138.675
SRR5252887	dormant buds	no	dormant buds(1 months)	146.795
SRR5252884	dormant buds	no	dormant buds(2 months)	181.52
SRR5252882	dormant buds	no	dormant buds(3 months)	159.77
SRR5252883	dormant buds	no	dormant buds(3 months)	312.385
SRR5252880	dormant buds	no	dormant buds(4 months)	160.582
SRR5252881	dormant buds	no	dormant buds(4 months)	188.804
SRR5252878	bud break	no	bud break	132.912
SRR5252879	bud break	no	bud break	113.661
SRR3744766	flower	no	mature	384.49
SRR3744767	flower	no	mature	380.07
SRR3744768	flower	no	mature	375.744
SRR6308190	stigmas	no	open flowers	312.025
SRR6308181	styles	no	open flowers	309.632
SRR6308188	filaments	no	open flowers	226.148
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	264.031
SRR6308192	pollen	no	open flowers	879.554
SRR6308191	petals	no	open flowers	264.36
SRR6308194	sepals	no	open flowers	203.051
SRR6308193	receptacles	no	open flowers	311.558
SRR6308189	ovaries	no	open flowers	256.688
SRR3384922	fruit	no	1 week after full bloom	340.036
SRR3384921	fruit	no	2 week after full bloom	408.836
SRR3384920	fruit	no	3 week after full bloom	336.73
SRR3384919	fruit	no	4 week after full bloom	366.362
SRR3384923	fruit	no	5 week after full bloom	337.08
SRR3384918	fruit	no	6 week after full bloom	386.943
SRR3384917	fruit	no	8 week after full bloom	431.091
SRR3384916	fruit	no	10 week after full bloom	302.734
SRR3384915	fruit	no	12 week after full bloom	277.628
SRR3384914	fruit	no	14 week after full bloom	325.134
SRR3384913	fruit	no	16 week after full bloom	392.982
SRR3384912	fruit	no	18 week after full bloom	303.602
SRR3384911	fruit	no	19 week after full bloom	404.488
SRR3384910	fruit	no	20 week after full bloom	302.053
SRR768128	whole fruit	no	25 days post anthesis	234.274
SRR768129	whole fruit	no	35 days post anthesis	321.467
SRR768130	whole fruit	no	60 days post anthesis	269.388
SRR768131	whole fruit	no	87 days post anthesis	212.181
SRR7343308	immature fruit flesh	no	immature	295.974
SRR7343309	immature fruit flesh	no	immature	328.494
SRR6320494	ripe fruit flesh	no	mature	339.692
SRR5405143	ripe fruit peel	no	mature	439.032
SRR6320572	ripe fruit peel	no	mature	473.267
SRR7403504	fruit	uninfected	mature	352.9
SRR7403506	fruit	uninfected	mature	359.385
SRR7403507	fruit	uninfected	mature	355.744
SRR7403500	fruit	infected with penicillium expansum	mature	160.92
SRR7403501	fruit	infected with penicillium expansum	mature	161.768
SRR7403508	fruit	infected with penicillium expansum	mature	164.565
SRR7403502	fruit	infected with penicillium expansum	mature	153.517
SRR7403503	fruit	infected with penicillium expansum	mature	145.734
SRR7403505	fruit	infected with penicillium expansum	mature	142.142
SRR1613973	Central seeds	no	20DAPF	270.149
SRR1613974	Central seeds	no	20DAPF	258.413
SRR1613975	Central seeds	no	20DAPF	283.96
SRR1613976	Lateral seeds	no	20DAPF	273.588
SRR1613977	Lateral seeds	no	20DAPF	306.241
SRR1613978	Lateral seeds	no	20DAPF	280.126
SRR3744786	stem	no	mature	455.081
SRR3744787	stem	no	mature	479.828
SRR3744772	stem	no	mature	450.696
SRX765691	seedling shoot apex	no	4-6 week old seedling	184.172
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	170.72
SRR1089478	leaf	Virus-free	plantlets	294.218
SRR1089477	leaf	ASGV-infected	plantlets	230.189
SRR767660	leaf	uninfected	fully developed	297.188
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	182.468
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	228.019
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	617.86
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	94.0072
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	297.965
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	257.326
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	315.191
SRR6308182	young leaf	no	immature leaves	238.544
SRR3744769	leaf	no	mature	500.126
SRR3744770	leaf	no	mature	455.288
SRR3744771	leaf	no	mature	469.602
SRR5405145	leaf	no	mature	173.316
SRR6320561	leaf	no	mature	205.21