Gene detail

Detail information of MD15G1207100 Annotation

Gene ID	Annotation
MD15G1207100	Transducin family protein / WD-40 repeat family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0353	Ras-related protein Rab-1A protein transport small GTPase mediated signal transduction DNA repair pollen tube growth NFC GTP binding DNA helicase activity damaged DNA binding ATP-dependent peptidase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1207100	mRNA	Chr15	16477003	16482474	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD
Epigenetic Regulators	NFC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G209600.1.p	1	Transducin family protein / WD-40 repeat family protein
Prunus persica	Prupe.7G209600.2.p	0.975	Transducin family protein / WD-40 repeat family protein
Rosa multiflora	Rmu_sc0005227.1_g000015.1	1	-
Rubus occidentalis	Ro01_G00911	1	-
Fragaria vesca	mrna12638.1	1	Transducin family protein / WD-40 repeat family protein
Vitis vinifera	GSVIVT01015200001	1	Transducin family protein / WD-40 repeat family protein
Oryza sativa	LOC_Os01g51300.1	1	"WD domain, G-beta repeat domain containing protein, expressed"
Zea mays	GRMZM2G137965_P01	1	Nucleosome/chromatin assembly factor group C;

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	21.2648
SRR5252888	dormant buds	no	dormant buds(0 month)	26.8274
SRR5252889	dormant buds	no	dormant buds(0 month)	25.8248
SRR5252886	dormant buds	no	dormant buds(1 months)	24.4421
SRR5252887	dormant buds	no	dormant buds(1 months)	18.8248
SRR5252884	dormant buds	no	dormant buds(2 months)	18.0928
SRR5252882	dormant buds	no	dormant buds(3 months)	26.211
SRR5252883	dormant buds	no	dormant buds(3 months)	19.2739
SRR5252880	dormant buds	no	dormant buds(4 months)	33.3844
SRR5252881	dormant buds	no	dormant buds(4 months)	33.7051
SRR5252878	bud break	no	bud break	35.4383
SRR5252879	bud break	no	bud break	38.6911
SRR3744766	flower	no	mature	18.223
SRR3744767	flower	no	mature	17.4708
SRR3744768	flower	no	mature	19.0179
SRR6308190	stigmas	no	open flowers	10.5124
SRR6308181	styles	no	open flowers	12.2489
SRR6308188	filaments	no	open flowers	17.9082
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.74169
SRR6308192	pollen	no	open flowers	2.21188
SRR6308191	petals	no	open flowers	16.0402
SRR6308194	sepals	no	open flowers	14.451
SRR6308193	receptacles	no	open flowers	27.5362
SRR6308189	ovaries	no	open flowers	19.7999
SRR3384922	fruit	no	1 week after full bloom	23.036
SRR3384921	fruit	no	2 week after full bloom	23.0312
SRR3384920	fruit	no	3 week after full bloom	21.506
SRR3384919	fruit	no	4 week after full bloom	20.8882
SRR3384923	fruit	no	5 week after full bloom	18.2121
SRR3384918	fruit	no	6 week after full bloom	17.7146
SRR3384917	fruit	no	8 week after full bloom	17.2042
SRR3384916	fruit	no	10 week after full bloom	17.7747
SRR3384915	fruit	no	12 week after full bloom	18.6793
SRR3384914	fruit	no	14 week after full bloom	17.1696
SRR3384913	fruit	no	16 week after full bloom	11.2012
SRR3384912	fruit	no	18 week after full bloom	15.8389
SRR3384911	fruit	no	19 week after full bloom	12.6367
SRR3384910	fruit	no	20 week after full bloom	15.1091
SRR768128	whole fruit	no	25 days post anthesis	34.2599
SRR768129	whole fruit	no	35 days post anthesis	22.6983
SRR768130	whole fruit	no	60 days post anthesis	17.5057
SRR768131	whole fruit	no	87 days post anthesis	19.3353
SRR7343308	immature fruit flesh	no	immature	24.0682
SRR7343309	immature fruit flesh	no	immature	23.0006
SRR6320494	ripe fruit flesh	no	mature	31.0831
SRR5405143	ripe fruit peel	no	mature	19.0713
SRR6320572	ripe fruit peel	no	mature	44.1117
SRR7403504	fruit	uninfected	mature	17.9219
SRR7403506	fruit	uninfected	mature	18.2522
SRR7403507	fruit	uninfected	mature	16.2311
SRR7403500	fruit	infected with penicillium expansum	mature	5.66683
SRR7403501	fruit	infected with penicillium expansum	mature	5.11879
SRR7403508	fruit	infected with penicillium expansum	mature	5.27156
SRR7403502	fruit	infected with penicillium expansum	mature	7.38718
SRR7403503	fruit	infected with penicillium expansum	mature	7.39735
SRR7403505	fruit	infected with penicillium expansum	mature	7.05852
SRR1613973	Central seeds	no	20DAPF	22.6393
SRR1613974	Central seeds	no	20DAPF	23.9206
SRR1613975	Central seeds	no	20DAPF	24.4646
SRR1613976	Lateral seeds	no	20DAPF	20.4888
SRR1613977	Lateral seeds	no	20DAPF	23.3149
SRR1613978	Lateral seeds	no	20DAPF	21.5276
SRR3744786	stem	no	mature	25.1351
SRR3744787	stem	no	mature	23.7538
SRR3744772	stem	no	mature	25.3591
SRX765691	seedling shoot apex	no	4-6 week old seedling	43.18
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	42.5752
SRR1089478	leaf	Virus-free	plantlets	18.744
SRR1089477	leaf	ASGV-infected	plantlets	15.116
SRR767660	leaf	uninfected	fully developed	14.5766
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.90886
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	13.8973
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.41065
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.30201
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	8.83756
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	20.5602
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	11.7488
SRR6308182	young leaf	no	immature leaves	43.3271
SRR3744769	leaf	no	mature	20.7412
SRR3744770	leaf	no	mature	20.1521
SRR3744771	leaf	no	mature	20.7918
SRR5405145	leaf	no	mature	16.5979
SRR6320561	leaf	no	mature	19.1743