Gene detail

Detail information of MD16G1082700 Annotation

Gene ID	Annotation
MD16G1082700	transmembrane receptors

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0411	zinc finger SWIM domain-containing protein 3 MBD photosystem II assembly regulation of multicellular organism growth maltose metabolic process starch biosynthetic process leaf morphogenesis cell differentiation methyl-CpG binding cysteine-type endopeptidase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1082700	mRNA	Chr16	5790493	5795267	-

Sequences

CDS:

MD16G1082700

AGGGAATCTGTGCTCACTTCTTAGCTAAACGAACGAACATAATGTCGAACGCGTAGACGCGCAAACGAAGCAAATGGCGGGAGAAGACGACGACGGCGACGCCGTTTCGTCAACCCCGGGTGGCTTCCGGCTACGCTGGGACGTGTTCCTGAGTTTCAGAGGAGAAGACACCCGCGCAACAATCACGAAGAGCTTGTACGAGGCCCTCAAAAGCCGCGGCGTCCGAGTCTTCTTAGACGACGACGGTTTGGACCGCGGGGACGACATCGCCCCAAGCCTGCTGGAAGCGATCGACGACTCGGCGGCCGCAATCGTCGTCTTGTCGCGGAGATACGCCGATTCGAGGTGGTGCTTGGAGGAGCTGGCTAAGATATGCGAGAGCAGCAGGAGGCGTCTGATTCTGCCTGTGTTCTACCAAGTGGATCCCTCCGACGTCCGACGACAGAGGGGCCCGTTTTCCGAACATTTTTCAGCTCACGAACTGCAGTATGGAAACGCCGTCGTGTCGAGATGGAGGAGCGCCATGGCCAAAGTCGGCGGCAAAGCCGGTTACGTTTGCGAACTCCTCCAGGAAGCAGAGGTGGTTCAGGGGTTGGTCAAAAAGGTTTTGAATGAAATAAGGAAAACCCCGGTAGGTCTTGCTTCCTACACAGTGGGACTTGATTCTCGAGTTGAAGATGTGATGAGGTTGTTAGATGTTCGATCCAATGGCGTTCGAGTGCTCGGAATTCATGGCATGGGTGGTGTTGGCAAGACGACTCTTGCCAAGGCCCTTTTTAACAGACTTGTTGCTTACTTTGAGCATCGCGGCTTCATCTCAAATGTTAGAGAAACTTCTGCAGGACACGAGGGGTTAGTATCGCTTCAAAACAGACTTATCGGTAGTCTTTCTACTGCGAAGATGCCGGTAAATGAACTTAACGCTGGTATTTCTGCAATAAAAGCGAGTGTGTACGAGAAGCGAGTTCTTATTGTTTTGGATGATGTTGATAATGTAGAGCAACTAAGTGCTTTAGTTGGCAACAGAGACTGGTTTTATGAAGGAAGCAGAATCATTGTTACCACAAGAGATAGAAGTGTCTTGCCCGATCATCTTGTGAACAAGTTGTATGAGGTCAGGGAGTTGGATTCGTCTCAGGCGCTTGAACTGTTTAGTTACCATGCACTGCGAAAAGAAAAGCCCCCTGAGGATTTCCTGGCCCTGTCCGAGCAAATTGTGTCTCTCACAGGTGGGCTACCGTTGGCTCTTGAAGTTTTCGGCTCTTACCTATTTTATCAGAGGAGAATAGAGGAATGGAGAGACGTTCTGCAGAAACTGAAACAGATTCGTCCCGGCAATCTTCAGGATGTGTTAAAGATAAGTTATGATGCTCTAGACGAGCAAGAGAAGTGTATCTTCCTAGACTTTGCATGTTTATTTGTGAAAATGAATATGAAGAGAGAAGATGCAATTGACATACTGAAGGGTTGTGGTTTTGATGGTGAGATAGCAATTGCTGACCTCACCGCAAAATCTCTCATGAAGGTTTATGAAGACGGCATGCTTTGGATGCACGATCAAGTTAGAGACATGGGAAGACAAATCGTTGTACATGAAAGCGTTGTAGATCCTGGCATGCGTAGTAGACTTTGGGATCGTGATGAAATCTTGAATGTCTTCAAGGATGATAAGGGAACAAGATGTATACAAGGGATAGTCTTAGACTTCGAATCATCGATAAGGAGGGTGTGGGATCCAAGTGGTGAGAGAGTTTCGTGGGACAACTTTCGAAAAAGCCCCAGTTTTTGCTCTGCAGTAACATACCTAAAGGAAAGGCACAAAGCTTATCTTCAAAATCAAGCAGAGAAAAAGAGAAAGGTTGTAATTTGCTCCAAACCCCTTGGAGCAATGGTCAATCTTAGACTTCTCCAAATTAATTTTGTGAATTTGGAAGGGAAGTTCAAGTTTCTTCCAGCTGAGTTGAAGTGGTTACAATGGAAAGGTTGTCCTATGAAATTTCTTCCTTCTGATTTTTCCCCTCGGCGACTTGCTGTCCTTGATCTTTCAAATAGCAAACTTGTAAGTTTGTGGCGCGGGCGTAACAAGGTGCCAGAGCAATTGATGTTCTTGATTCTACACAAATGCTCTTATCTAACTGCTATACCTGATTTATCTGGTAACCGCGCCTTGGAAAAGATTGTTCTTGAGCTATGTGTTAATCTCAATAAACTTCATGACTCGGTTGGGAATTTGAATACATTAGTCCACTTGAACCTGAGAGGTTGTTCAAACCTTATTGAACTTCCCAGTGATGTATCTGGCCTGAGAAAACTTGAGAACCTATTCCTCACCGGTTGCTCAAAATTGAAAAAACTGCCCAGCAACATGGACAGCATGGTATCATTGAAAGAACTTCTCCTTGACGAGACAGTGATAGAGAGTCTTCCTGAATCTATCTTCAAGCTTACGAAACTCGAAAGGCTCAGCTTGAACCGATGCAAATTTTTGAAAGGGCTACCTGAGTTGATAGGAAAGTTGTGTTCTCTCAAAGAAATATCCCTTAATGAATCAGCTTTAGAAAAACTACCCGATTCATTTGGATCTTTGGCAAACCTTGAGAGACTAAGTTTGCTCTGGTGTGAATCACTGACCACCATTCCAGATTCCATTGGAAACCTGAATTCGTTAGTGGAATTTCTTACTTATGGTAGTCCTATCAAAGAACTGCCTGCGTCCATTGGTTCATTGTCAAACTTGAGGGAGTTATCGGTGGGGCGCGGCGAGTTTATGAGAGTATTGCCTGATTCAGTTGGAGGTTTAAATTCTCTAGTTGTGCTACAAATAGATGAGACATTAATCACAAATCTCCCACATGAAATCGGTGCCTTGAAAACACTTGAGAAGCTTGAGATGAGGAAATGTGGATTTCTTAGATCATTACCGCAGTCAATCGGAAAGCATGAGGGGACTAACTGCTATAGTCATAACCGATGCTACTATCACAGAGTTGCCAGAATCAGTAGGGATGTTGGAAAATCTTACCGTGTTGCGCTTGAACGGATGTAAACAGTTACGCAAGCTTCCAGCTTCGATAGGACAACTCATGTCCTTGCACAGATTGCAGATAGCGAATACTG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G27170.1	1	transmembrane receptors;ATP binding
Arabidopsis thaliana	AT1G27170.2	0.906	transmembrane receptors;ATP binding
Arabidopsis thaliana	AT1G27180.1	0.719	"disease resistance protein (TIR-NBS-LRR class), putative"
Prunus persica	Prupe.1G263400.1.p	1	transmembrane receptors;ATP binding
Pyrus x bretschneideri	Pbr009331.1	1	-
Rosa multiflora	Rmu_co8516079.1_g000001.1	1	-
Fragaria vesca	mrna00748.1	1	"disease resistance protein (TIR-NBS-LRR class), putative"
Vitis vinifera	GSVIVT01020123001	1	transmembrane receptors;ATP binding
Solanum lycopersicum	Solyc05g006620.2.1	1	transmembrane receptors;ATP binding
Populus trichocarpa	Potri.012G053200.1	1	transmembrane receptors;ATP binding
Populus trichocarpa	Potri.015G043600.1	0.654	transmembrane receptors;ATP binding
Nicotiana benthamiana	Niben101Scf04191g04030.1	1	"disease resistance protein (TIR-NBS-LRR class), putative LENGTH=1556"

Gene Ontology

GO term	Description	Category
GO:0007165	signal transduction	biological_process
GO:0006952	defense response	biological_process
GO:0043531	ADP binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.18	NB-ARC	198	467	6.50E-36

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.32478
SRR5252888	dormant buds	no	dormant buds(0 month)	16.0882
SRR5252889	dormant buds	no	dormant buds(0 month)	17.3712
SRR5252886	dormant buds	no	dormant buds(1 months)	14.7868
SRR5252887	dormant buds	no	dormant buds(1 months)	12.0097
SRR5252884	dormant buds	no	dormant buds(2 months)	9.75411
SRR5252882	dormant buds	no	dormant buds(3 months)	17.8619
SRR5252883	dormant buds	no	dormant buds(3 months)	15.7805
SRR5252880	dormant buds	no	dormant buds(4 months)	17.5521
SRR5252881	dormant buds	no	dormant buds(4 months)	18.5689
SRR5252878	bud break	no	bud break	25.0763
SRR5252879	bud break	no	bud break	8.72374
SRR3744766	flower	no	mature	7.31616
SRR3744767	flower	no	mature	7.65982
SRR3744768	flower	no	mature	6.98233
SRR6308190	stigmas	no	open flowers	2.15766
SRR6308181	styles	no	open flowers	2.76863
SRR6308188	filaments	no	open flowers	3.18142
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.46528
SRR6308192	pollen	no	open flowers	0.666192
SRR6308191	petals	no	open flowers	4.96147
SRR6308194	sepals	no	open flowers	6.03312
SRR6308193	receptacles	no	open flowers	4.43616
SRR6308189	ovaries	no	open flowers	3.51556
SRR3384922	fruit	no	1 week after full bloom	0.128618
SRR3384921	fruit	no	2 week after full bloom	0.33413
SRR3384920	fruit	no	3 week after full bloom	0.760035
SRR3384919	fruit	no	4 week after full bloom	0.294454
SRR3384923	fruit	no	5 week after full bloom	0.258483
SRR3384918	fruit	no	6 week after full bloom	0.215809
SRR3384917	fruit	no	8 week after full bloom	0.380811
SRR3384916	fruit	no	10 week after full bloom	0.202379
SRR3384915	fruit	no	12 week after full bloom	0.4523
SRR3384914	fruit	no	14 week after full bloom	0.490274
SRR3384913	fruit	no	16 week after full bloom	0.303927
SRR3384912	fruit	no	18 week after full bloom	0.228176
SRR3384911	fruit	no	19 week after full bloom	0.0547118
SRR3384910	fruit	no	20 week after full bloom	0.578311
SRR768128	whole fruit	no	25 days post anthesis	4.2822
SRR768129	whole fruit	no	35 days post anthesis	0.783749
SRR768130	whole fruit	no	60 days post anthesis	2.85658
SRR768131	whole fruit	no	87 days post anthesis	3.74131
SRR7343308	immature fruit flesh	no	immature	8.65473
SRR7343309	immature fruit flesh	no	immature	8.02526
SRR6320494	ripe fruit flesh	no	mature	2.92093
SRR5405143	ripe fruit peel	no	mature	5.49271
SRR6320572	ripe fruit peel	no	mature	2.42152
SRR7403504	fruit	uninfected	mature	1.47348
SRR7403506	fruit	uninfected	mature	1.2694
SRR7403507	fruit	uninfected	mature	1.0048
SRR7403500	fruit	infected with penicillium expansum	mature	0.184869
SRR7403501	fruit	infected with penicillium expansum	mature	0.0548682
SRR7403508	fruit	infected with penicillium expansum	mature	0.19777
SRR7403502	fruit	infected with penicillium expansum	mature	0.0611621
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.153513
SRR1613973	Central seeds	no	20DAPF	2.31174
SRR1613974	Central seeds	no	20DAPF	2.64174
SRR1613975	Central seeds	no	20DAPF	1.58126
SRR1613976	Lateral seeds	no	20DAPF	1.90521
SRR1613977	Lateral seeds	no	20DAPF	1.60543
SRR1613978	Lateral seeds	no	20DAPF	2.05486
SRR3744786	stem	no	mature	10.5113
SRR3744787	stem	no	mature	10.15
SRR3744772	stem	no	mature	11.0587
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.35184
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.39767
SRR1089478	leaf	Virus-free	plantlets	4.21906
SRR1089477	leaf	ASGV-infected	plantlets	5.12078
SRR767660	leaf	uninfected	fully developed	3.92933
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.97799
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	7.59589
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.02329
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.12179
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.14675
SRR6308182	young leaf	no	immature leaves	2.17928
SRR3744769	leaf	no	mature	17.4979
SRR3744770	leaf	no	mature	17.8795
SRR3744771	leaf	no	mature	18.4711
SRR5405145	leaf	no	mature	10.1391
SRR6320561	leaf	no	mature	7.63443