| Gene ID | Annotation |
|---|---|
| MD16G1171700 | cullin 1 |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0221 | cullin 1 condensed nuclear chromosome SCF complex assembly Cullin spindle ubiquitin ligase complex phragmoplast protein import into peroxisome matrix fatty acid beta-oxidation regulation of circadian rhythm lateral root formation phloem or xylem histogenesis regulation of cell cycle process embryonic pattern specification regulation of cell differentiation 3-dehydrosphinganine reductase [EC:1.1.1.102] primary shoot apical meristem specification pre-mRNA branch site protein p14 nucleotide binding 3-dehydrosphinganine reductase activity ubiquitin protein ligase binding cell division cotyledon development Cul4-RING E3 ubiquitin ligase complex serine/threonine-protein phosphatase 2A regulatory subunit B'' leaf development protein N-linked glycosylation amino acid import RNA processing protein glycosylation ER to Golgi vesicle-mediated transport mitotic cell cycle sphingolipid biosynthetic process sister chromatid cohesion seed dormancy process serine/threonine-protein phosphatase 2A regulatory subunit B' |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD16G1171700 | mRNA | Chr16 | 14415180 | 14423825 | + |
| CDS: |
| MD16G1171700 |
| Protein: |
| MD16G1171700 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | Cullin |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G02570.2 | 1 | ATCUL1;AXR6;CUL1|cullin 1;AUXIN RESISTANT 6 |
| Arabidopsis thaliana | AT4G02570.3 | 1 | ATCUL1;AXR6;CUL1|cullin 1;AUXIN RESISTANT 6 |
| Arabidopsis thaliana | AT4G02570.4 | 1 | ATCUL1;AXR6;CUL1|cullin 1;AUXIN RESISTANT 6 |
| Arabidopsis thaliana | AT4G02570.1 | 1 | ATCUL1;AXR6;CUL1|cullin 1;AUXIN RESISTANT 6 |
| Oryza sativa | LOC_Os01g27150.2 | 1 | "cullin, putative, expressed" |
| Oryza sativa | LOC_Os05g05700.2 | 1 | "cullin, putative, expressed" |
| Zea mays | GRMZM2G166694_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| GO:0031461 | cullin-RING ubiquitin ligase complex | cellular component |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| KO | Description | Enzyme |
|---|---|---|
| K03347 | cullin 1 | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10557.5 | Cullin_Nedd8 | 655 | 719 | 8.20E-27 |
 |