Gene detail

Detail information of MD16G1203300 Annotation

Gene ID	Annotation
MD16G1203300	SNARE-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1203300	mRNA	Chr16	18473215	18475871	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G60970.1	1	SNARE-like superfamily protein
Prunus persica	Prupe.4G074900.2.p	1	SNARE-like superfamily protein
Prunus persica	Prupe.4G074900.1.p	1	SNARE-like superfamily protein
Pyrus communis	PCP024357.1	1	-
Pyrus x bretschneideri	Pbr039542.1	1	-
Pyrus x bretschneideri	Pbr021322.1	1	-
Rosa multiflora	Rmu_sc0037731.1_g000003.1	1	-
Rosa multiflora	Rmu_sc0003892.1_g000019.1	0.84	-
Rubus occidentalis	Ro03_G13402	1	-
Fragaria vesca	mrna24896.1	1	SNARE-like superfamily protein
Vitis vinifera	GSVIVT01021391001	1	SNARE-like superfamily protein
Solanum lycopersicum	Solyc02g071170.2.1	1	SNARE-like superfamily protein
Nicotiana benthamiana	Niben101Scf01785g05001.1	1	Coatomer subunit zeta-2
Nicotiana benthamiana	Niben101Scf05409g00003.1	0.708	Coatomer subunit zeta-2
Oryza sativa	LOC_Os05g38610.1	1	"clathrin adaptor complex small chain domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
GO:0006810	transport	biological_process

KEGG

KO	Description	Enzyme
K20472	coatomer subunit zeta	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.16	Clat_adaptor_s	7	147	1.20E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	64.3484
SRR5252888	dormant buds	no	dormant buds(0 month)	21.4602
SRR5252889	dormant buds	no	dormant buds(0 month)	19.5108
SRR5252886	dormant buds	no	dormant buds(1 months)	30.3666
SRR5252887	dormant buds	no	dormant buds(1 months)	29.3397
SRR5252884	dormant buds	no	dormant buds(2 months)	14.8376
SRR5252882	dormant buds	no	dormant buds(3 months)	14.2939
SRR5252883	dormant buds	no	dormant buds(3 months)	14.2954
SRR5252880	dormant buds	no	dormant buds(4 months)	13.6792
SRR5252881	dormant buds	no	dormant buds(4 months)	17.027
SRR5252878	bud break	no	bud break	19.2694
SRR5252879	bud break	no	bud break	33.5624
SRR3744766	flower	no	mature	21.7206
SRR3744767	flower	no	mature	17.5735
SRR3744768	flower	no	mature	20.5882
SRR6308190	stigmas	no	open flowers	31.6106
SRR6308181	styles	no	open flowers	34.3672
SRR6308188	filaments	no	open flowers	53.6003
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	39.1754
SRR6308192	pollen	no	open flowers	78.1678
SRR6308191	petals	no	open flowers	43.3165
SRR6308194	sepals	no	open flowers	30.0175
SRR6308193	receptacles	no	open flowers	34.7897
SRR6308189	ovaries	no	open flowers	38.0187
SRR3384922	fruit	no	1 week after full bloom	47.1181
SRR3384921	fruit	no	2 week after full bloom	43.7589
SRR3384920	fruit	no	3 week after full bloom	48.1412
SRR3384919	fruit	no	4 week after full bloom	71.9194
SRR3384923	fruit	no	5 week after full bloom	66.3221
SRR3384918	fruit	no	6 week after full bloom	66.225
SRR3384917	fruit	no	8 week after full bloom	56.5035
SRR3384916	fruit	no	10 week after full bloom	44.0737
SRR3384915	fruit	no	12 week after full bloom	60.3963
SRR3384914	fruit	no	14 week after full bloom	46.8055
SRR3384913	fruit	no	16 week after full bloom	43.2151
SRR3384912	fruit	no	18 week after full bloom	42.6896
SRR3384911	fruit	no	19 week after full bloom	45.6237
SRR3384910	fruit	no	20 week after full bloom	39.0806
SRR768128	whole fruit	no	25 days post anthesis	26.0655
SRR768129	whole fruit	no	35 days post anthesis	50.9672
SRR768130	whole fruit	no	60 days post anthesis	43.1306
SRR768131	whole fruit	no	87 days post anthesis	39.476
SRR7343308	immature fruit flesh	no	immature	47.175
SRR7343309	immature fruit flesh	no	immature	48.2008
SRR6320494	ripe fruit flesh	no	mature	23.1586
SRR5405143	ripe fruit peel	no	mature	27.0576
SRR6320572	ripe fruit peel	no	mature	9.28823
SRR7403504	fruit	uninfected	mature	15.2852
SRR7403506	fruit	uninfected	mature	14.1618
SRR7403507	fruit	uninfected	mature	16.2415
SRR7403500	fruit	infected with penicillium expansum	mature	17.5871
SRR7403501	fruit	infected with penicillium expansum	mature	22.593
SRR7403508	fruit	infected with penicillium expansum	mature	18.8144
SRR7403502	fruit	infected with penicillium expansum	mature	16.3917
SRR7403503	fruit	infected with penicillium expansum	mature	16.8533
SRR7403505	fruit	infected with penicillium expansum	mature	12.0975
SRR1613973	Central seeds	no	20DAPF	32.9219
SRR1613974	Central seeds	no	20DAPF	30.3382
SRR1613975	Central seeds	no	20DAPF	30.4539
SRR1613976	Lateral seeds	no	20DAPF	32.6342
SRR1613977	Lateral seeds	no	20DAPF	31.9824
SRR1613978	Lateral seeds	no	20DAPF	30.9186
SRR3744786	stem	no	mature	10.5762
SRR3744787	stem	no	mature	10.7694
SRR3744772	stem	no	mature	11.0791
SRX765691	seedling shoot apex	no	4-6 week old seedling	23.7025
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	31.305
SRR1089478	leaf	Virus-free	plantlets	8.2362
SRR1089477	leaf	ASGV-infected	plantlets	8.97142
SRR767660	leaf	uninfected	fully developed	11.7221
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	8.16554
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	18.3597
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	14.2714
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.08024
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	16.0826
SRR6308182	young leaf	no	immature leaves	37.3292
SRR3744769	leaf	no	mature	8.4663
SRR3744770	leaf	no	mature	8.54853
SRR3744771	leaf	no	mature	10.2624
SRR5405145	leaf	no	mature	13.7723
SRR6320561	leaf	no	mature	33.1458