Gene detail

Detail information of MD16G1263300 Annotation

Gene ID	Annotation
MD16G1263300	ATPase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0134	hydrogen ion channel activity proton-transporting ATP synthase complex dATP biosynthetic process from ADP chloroplast ATP synthase complex hydrogen ion transmembrane transporter activity ATP synthesis coupled proton transport DNA-templated transcription photosynthesis UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity large subunit ribosomal protein L28e UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] phospho-N-acetylmuramoyl-pentapeptide-transferase activity malate dehydrogenase (decarboxylating) (NADP+) activity oxidoreductase activity bile acid:sodium symporter activity protein homotetramerization

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1263300	mRNA	Chr16	32952499	32953476	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Solanum lycopersicum	Solyc10g044560.1.1	1	"ATPase, F0 complex, subunit A protein"
Nicotiana benthamiana	Niben101Scf00167g04017.1	1	"ATP synthase subunit a, chloroplastic"

Gene Ontology

GO term	Description	Category
GO:0005840	ribosome	cellular component
GO:0015078	hydrogen ion transmembrane transporter activity	molecular_function
GO:0015986	ATP synthesis coupled proton transport	biological_process
GO:0003735	structural constituent of ribosome	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00119.16	ATP-synt_A	71	200	3.50E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.34527
SRR5252888	dormant buds	no	dormant buds(0 month)	23.7663
SRR5252889	dormant buds	no	dormant buds(0 month)	35.8749
SRR5252886	dormant buds	no	dormant buds(1 months)	19.212
SRR5252887	dormant buds	no	dormant buds(1 months)	17.5017
SRR5252884	dormant buds	no	dormant buds(2 months)	10.0931
SRR5252882	dormant buds	no	dormant buds(3 months)	27.6431
SRR5252883	dormant buds	no	dormant buds(3 months)	17.3943
SRR5252880	dormant buds	no	dormant buds(4 months)	23.3139
SRR5252881	dormant buds	no	dormant buds(4 months)	24.7992
SRR5252878	bud break	no	bud break	47.2166
SRR5252879	bud break	no	bud break	43.1311
SRR3744766	flower	no	mature	0.515127
SRR3744767	flower	no	mature	0.228009
SRR3744768	flower	no	mature	0.0786409
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.252955
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.392094
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.32587
SRR6308194	sepals	no	open flowers	0.632167
SRR6308193	receptacles	no	open flowers	0.503824
SRR6308189	ovaries	no	open flowers	0.204163
SRR3384922	fruit	no	1 week after full bloom	2.55274
SRR3384921	fruit	no	2 week after full bloom	1.18422
SRR3384920	fruit	no	3 week after full bloom	0.521364
SRR3384919	fruit	no	4 week after full bloom	0.963326
SRR3384923	fruit	no	5 week after full bloom	1.22149
SRR3384918	fruit	no	6 week after full bloom	1.35977
SRR3384917	fruit	no	8 week after full bloom	0.736183
SRR3384916	fruit	no	10 week after full bloom	1.27515
SRR3384915	fruit	no	12 week after full bloom	1.13156
SRR3384914	fruit	no	14 week after full bloom	2.74362
SRR3384913	fruit	no	16 week after full bloom	1.07718
SRR3384912	fruit	no	18 week after full bloom	0.808699
SRR3384911	fruit	no	19 week after full bloom	1.74518
SRR3384910	fruit	no	20 week after full bloom	0.910954
SRR768128	whole fruit	no	25 days post anthesis	1.51998
SRR768129	whole fruit	no	35 days post anthesis	6.91513
SRR768130	whole fruit	no	60 days post anthesis	17.1909
SRR768131	whole fruit	no	87 days post anthesis	4.21294
SRR7343308	immature fruit flesh	no	immature	2.16338
SRR7343309	immature fruit flesh	no	immature	1.08266
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	1.83832
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.602817
SRR7403506	fruit	uninfected	mature	0.955182
SRR7403507	fruit	uninfected	mature	0.504052
SRR7403500	fruit	infected with penicillium expansum	mature	0.259668
SRR7403501	fruit	infected with penicillium expansum	mature	1.54137
SRR7403508	fruit	infected with penicillium expansum	mature	0.55558
SRR7403502	fruit	infected with penicillium expansum	mature	0.859089
SRR7403503	fruit	infected with penicillium expansum	mature	0.479767
SRR7403505	fruit	infected with penicillium expansum	mature	0.431252
SRR1613973	Central seeds	no	20DAPF	0.0534439
SRR1613974	Central seeds	no	20DAPF	0.0367172
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.0786526
SRR1613977	Lateral seeds	no	20DAPF	0.15211
SRR1613978	Lateral seeds	no	20DAPF	0.139721
SRR3744786	stem	no	mature	0.0883848
SRR3744787	stem	no	mature	0.613891
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.376984
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.305946
SRR1089478	leaf	Virus-free	plantlets	372.038
SRR1089477	leaf	ASGV-infected	plantlets	455.971
SRR767660	leaf	uninfected	fully developed	152.501
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	147.839
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	84.9986
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	522.188
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	235.993
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	84.9819
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	70.2507
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	52.4292
SRR6308182	young leaf	no	immature leaves	0.211258
SRR3744769	leaf	no	mature	0.536904
SRR3744770	leaf	no	mature	0.288402
SRR3744771	leaf	no	mature	0.381715
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.444335