Gene detail

Detail information of GWHGAAZE000022

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002515179.1	conserved hypothetical protein [Ricinus communis]
COG	NP_682641.1	preprotein translocase subunit SecA
Swissprot	tr\|Q36795\|SECA_SPIOL	Protein translocase subunit SecA, chloroplastic (Precursor)
trEMBL	tr\|B9RN40\|B9RN40_RICCO	Protein translocase subunit SecA {ECO:0000256\|RuleBase:RU003874}
TAIR10	AT4G01800.1	Albino or Glassy Yellow 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	766873	779106	-
GWHAAZE00000001	mRNA	766873	779106	-
GWHAAZE00000001	exon	766873	767308	-
GWHAAZE00000001	exon	767442	767681	-
GWHAAZE00000001	exon	768222	768372	-
GWHAAZE00000001	exon	768798	768865	-
GWHAAZE00000001	exon	768949	769200	-
GWHAAZE00000001	exon	769283	769384	-
GWHAAZE00000001	exon	769589	769657	-
GWHAAZE00000001	exon	770636	770782	-
GWHAAZE00000001	exon	770889	770955	-
GWHAAZE00000001	exon	771576	771758	-
GWHAAZE00000001	exon	771954	772126	-
GWHAAZE00000001	exon	775273	775386	-
GWHAAZE00000001	exon	775484	775597	-
GWHAAZE00000001	exon	776373	776591	-
GWHAAZE00000001	exon	779050	779106	-
GWHAAZE00000001	CDS	779050	779106	-
GWHAAZE00000001	CDS	776373	776591	-
GWHAAZE00000001	CDS	775484	775597	-
GWHAAZE00000001	CDS	775273	775386	-
GWHAAZE00000001	CDS	771954	772126	-
GWHAAZE00000001	CDS	771576	771758	-
GWHAAZE00000001	CDS	770889	770955	-
GWHAAZE00000001	CDS	770636	770782	-
GWHAAZE00000001	CDS	769589	769657	-
GWHAAZE00000001	CDS	769283	769384	-
GWHAAZE00000001	CDS	768949	769200	-
GWHAAZE00000001	CDS	768798	768865	-
GWHAAZE00000001	CDS	768222	768372	-
GWHAAZE00000001	CDS	767442	767681	-
GWHAAZE00000001	CDS	767159	767308	-
GWHAAZE00000001	three_prime_UTR	766873	767158	-

Transcript Sequence
>GWHTAAZE000022 ATGGTCTGGTACGAGCTCTATGCAAGTGCAAATAGAGTCTATGGAAATGCAAAAGTGGTTGATGAAAAGCAGAAAACTGTTTTACTTACAGAACAGGGTTATGCAGACGCTGAGGAAATTCTGGATGTAAAGGATTTATATGATCCCCGAGAACAGTGGGCATCATATCTCCTCAATGCGATTAAAGCAAAAGAACTTTTTCTTAGAGATGTGAACTATATTATTCGTGGCAAGGAGGTTCTTATAGTAGACGAATTCTCTGGCCGAGTCATGCAGGGGAGGCGTTGGAGTGATGGACTTCACCAGGCAGTCGAAGCAAAAGAAGGCTTGCCAATTCAAAATGAAACTGTGACTCTGGCTTCAATCAGCTACCAAAACTTCTTTCTCCAGTTCCCAAAACTCTGCGGCATGACTGGGACAGCAGCAACCGAGACTGCAGAGTTCGAGAGTATATACAAGCTCAAAGTTACAATTGTGCCTACAAACAAGCCTATGATAAGAAAGGATGAATCGGACGTAGTGTTTAAGGCGACTACAGGAAAATGGCGGGCAGTTGTGGTAGAAATTTCCAGAATGAATAGAACAGGTCGCCCAGTGCTTGTTGGTACAACCAGTGTTGAGCAGAGTGACGCATTGTCAGAACAGCTACATGAAGCTGGGATCCCTCATGAGGTGAGTGTAAAGGTTCTTAATGCAAAACCAGAGAACGTGGAGAGAGAAGCTGAGATAGTGGCACAGAGTGGCCGTCTTGGGGCAGTTACTATTGCTACAAATATGGCAGGTCGTGGAACAGATATAATACTTGGTGGTAATGCCGAATTTATGGCAAGGTTGAAGCTACGTGAGATGCTGATGCCAAGAGTAGTTAAGCAAGCTGAAGGAGTTTTTGTTTCAGTGAAGAAACCTCCTCCAAAGAAGATATGGAAGGTGAATGAAAGCTTATTTCCATGTGCACTATCGGAAGAGAAAACCAAGTTGGCTGAGGAAGCTGTACAATTAGCTGTCGAAACTTGGGGTCAGCGATCATTAACGGAGCTTGAAGCAGAGGAGCGGCTTTCTTATTCTTGTGAAAAGGTTGTGTCGGCAGGCGGACTTCATGTTGTGGGAACGGAACGCCATGAATCACGTCGAATTGACAATCAGTTGCGTGGTCGAAGTGGCAGGCAAGGGGATCCTGGAAGTTCTCGCTTCTTCCTTAGCCTTGAAGACAACATCTTTCGAATTTTTGGAGGGGACAGGATTCAGGGTTTGATGAGAGCTTTTAGAGTTGAGGACCTACCAATTGAATCCAAGATGTTGACAAAAGCCCTTGATGAAGCTCAGCGGAAAGTGGAAAATTACTTTTTTGATATTCGGAAGCAACTATTCGAGTATGATGAGGTTTTAAACAGCCAAAGAGATCGTGTGTACACAGAAAGAAGACGAGCCCTAGAATCTGAATCTCTTCAAGCACTTATTATTGAGTATGCTGAATTAACAATGGATGATATCTTAGAGGCAAATATCGAGTCTGATGCTCCGAAAGAAAGCTGGGATCTGGAAAAGCTCATTTTAAAACTCCAACAGATTGCTGAAAATTTACACCACCTTATATGTAGGTACTGCTATCTGTTGAATGATTTGACACCAGATTTGTTGATGAGCAAATGTTCAGATTATGAAGACCTGCAAAACTATCTTCGTGTTCGTGGTGTTGAAGCTTATTTGCAGAAAAAGGATATTGTGGAGAAAGAGGCACCGGGGTTGATGAAGGAAGCAGAGAGGTTCCTAATTTTGAGCAACATTGATCGTTTATGGAAAGAACACTTGCAAGCGCTCAAGTTCGTGCAGCAAGCTGTAGGTTTACGTGGATATGCACAACGGGATCCGCTTATTGAGTACAAACTCGAAGGCTACAACCTTTTCATAGAGATGATGGCACAAATAAGAAGAAATGTTATATATTCTGTTTATCAGTTTAAACCAGTGATGGTGAAGGATCAGGAACAACGTGGCGAGAAACCAGGCAAGCTTGTCACAAATGGAAGGGGTGGTAGGAATAATGGCTCGAATCCAGTCAGTTCTGCTGGGACTTCATCAGCCGTGAGCCCCTCAGCTAGTGCATGAGACCTCTCACTTTGAGAAGAGATCTGTAAATTTTCAGAAGTGGTAACTGCAATATAAAGATGTTTCTGCTTTGGATCATAATATGTTGGGCTTCATTTGCCGTAAAAGTGTAATATTGTTGCCCTGCTTTAGACCTTGTAAATTATGCAAGAGGTAAATACAAGAACCACGAGATTGGACTGTATATTATGCAAGAGACTCACCTGTTATACTTGTATATTTCTTCGGCCACATAAACTTGGATTTATTGAAATAGAAATCAACTTTCAACTGTTTAATGCATTAG

Network for GWHGAAZE000022

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01043.21	SecA_PP_bind	19	105	2.80E-30
PF07517.15	SecA_DEAD	94	149	2.20E-15
PF07516.14	SecA_SW	427	652	9.50E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03070	secA	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0006605	biological_process	protein targeting
GO:0006886	biological_process	intracellular protein transport
GO:0017038	biological_process	protein import
GO:0016020	cellular_component	membrane
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.822
	SRR3591706	second leaf	63.163
	SRR3591707	mature leaf	80.135
	SRR3591708	Shoot apex	36.469
	SRR3591709	Stem	24.123
	SRR3591710	White floral bud	27.263
	SRR3591711	White flower	31.847
	SRR3591712	Green floral bud	19.265
	SRR3591713	Yellow flower	33.856
SRP173429	SRR8316895	Juvenile bud stage	23.309
	SRR8316896	Juvenile bud stage	33.287
	SRR8316897	Juvenile bud stage	18.968
	SRR8316894	Third green stage	13.525
	SRR8316900	Third green stage	33.390
	SRR8316901	Third green stage	32.284
	SRR8316898	Complete white stage	11.171
	SRR8316899	Complete white stage	30.559
	SRR8316903	Complete white stage	24.267
	SRR8316902	Silver flowering stage	16.033
	SRR8316904	Silver flowering stage	25.476
	SRR8316905	Silver flowering stage	13.148
	SRR8316906	Gold flowering stage	34.410
	SRR8316907	Gold flowering stage	37.844
	SRR8316908	Gold flowering stage	40.727
SRP132670	SRR6706286	Control	36.432
	SRR6706287	Light intensity 50%	33.272
	SRR6706288	Light intensity 20%	36.539
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.426
	CNS0095593	Slightly white alabastrum(diploid) 2	18.177
	CNS0095594	Slightly white alabastrum(diploid) 3	20.046
	CNS0095595	Whole white alabastrum(diploid) 2	16.427
	CNS0095596	Whole white alabastrum(diploid) 3	12.962
	CNS0095597	Whole white alabastrum(diploid) 4	15.394
	CNS0095598	Silvery flower (diploied) 1	31.975
	CNS0095599	Silvery flower (diploied) 2	26.392
	CNS0095600	Silvery flower (diploied) 3	29.884
	CNS0095601	Golden flower (diploid) 1	30.139
	CNS0095602	Golden flower (diploid) 2	29.344
	CNS0095603	Golden flower (diploid) 3	27.521
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.458
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.038
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.860
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.416
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.817
	CNS0095610	Silvery flower (diploied) 1	59.635
	CNS0095611	Silvery flower (diploied) 2	45.980
	CNS0095612	Silvery flower (diploied) 3	46.207
	CNS0095613	Golden flower (tetraploid) 1	38.804
	CNS0095614	Golden flower (tetraploid) 2	47.273
	CNS0095615	Golden flower (tetraploid) 3	38.158
CRA001975	CRR073297	Stem 1	30.468
	CRR073298	Stem 2	23.884
	CRR073299	Stem 3	16.316
	CRR073300	Leaf 1	23.459
	CRR073301	Leaf 2	23.419
	CRR073302	Leaf 3	11.075
	CRR073303	Juvenile bud 1	12.830
	CRR073304	Juvenile bud 2	8.129
	CRR073305	Juvenile bud 3	16.894
	CRR073306	Third green 1	8.481
	CRR073307	Third green 2	5.180
	CRR073308	Third green 3	6.448
	CRR073309	Second white 1	8.484
	CRR073310	Second white 2	12.313
	CRR073311	Second white 3	9.723
	CRR073312	Silver flowering 1	9.926
	CRR073313	Silver flowering 2	11.134
	CRR073314	Silver flowering 3	10.310
	CRR073315	Gold flowering 1	26.144
	CRR073316	Gold flowering 2	48.156
	CRR073317	Gold flowering 3	14.069
	CRR073318	Tawny withering 1	11.061
	CRR073319	Tawny withering 2	14.064
	CRR073320	Tawny withering 3	11.073