Gene detail

Detail information of GWHGAAZE000035

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652308.1	PREDICTED: squamosa promoter-binding-like protein 1 [Vitis vinifera]
Swissprot	tr\|Q9SMX9\|SPL1_ARATH	Squamosa promoter-binding-like protein 1
trEMBL	tr\|F6HZE3\|F6HZE3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60058.1}
TAIR10	AT2G47070.1	squamosa promoter binding protein-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	990773	999131	+
GWHAAZE00000001	mRNA	990773	999131	+
GWHAAZE00000001	exon	990773	991169	+
GWHAAZE00000001	exon	991256	991385	+
GWHAAZE00000001	exon	993430	993611	+
GWHAAZE00000001	exon	994346	994932	+
GWHAAZE00000001	exon	996111	996185	+
GWHAAZE00000001	exon	996296	996403	+
GWHAAZE00000001	exon	996484	996604	+
GWHAAZE00000001	exon	996757	996898	+
GWHAAZE00000001	exon	997084	997237	+
GWHAAZE00000001	exon	997628	998266	+
GWHAAZE00000001	exon	998567	999131	+
GWHAAZE00000001	CDS	990773	991169	+
GWHAAZE00000001	CDS	991256	991385	+
GWHAAZE00000001	CDS	993430	993611	+
GWHAAZE00000001	CDS	994346	994932	+
GWHAAZE00000001	CDS	996111	996185	+
GWHAAZE00000001	CDS	996296	996403	+
GWHAAZE00000001	CDS	996484	996604	+
GWHAAZE00000001	CDS	996757	996898	+
GWHAAZE00000001	CDS	997084	997237	+
GWHAAZE00000001	CDS	997628	998266	+
GWHAAZE00000001	CDS	998567	999010	+
GWHAAZE00000001	three_prime_UTR	999011	999131	+

Transcript Sequence
>GWHTAAZE000035 ATGGCTACGAGGACAGCAGAGGGAAAGAGGGCCGTGGAATGGGATCCCACTCACTGGAAATGGGACGGTGACCTTTTCTTGGCTACCCCCTTGAATTCCAATTCCCCCAATAATATTTACCAGAGCAGGCAAAGGCAGCAATTATTCCCACCTCTCCAAACTGGTGGTATTATTCCCATGCCCAGGTTTTCCTCAAATAGCTCATCTTCCTGTTCAGATGAAGTGAATCTTGGGATTCAAAGAGCTACTAGTAAAACTGAATTAGAGAAGCGAAGGAGGGTCACTTTAATTGAAGATGATGAGGAGGAGGCCGGTAGCCTAAGCCTAAAGCCTGCAGGAGCAGGATTAGGAGAAGGGCATATGAGGACGACAGAAAGTGAGGTGGTGAATTGGGAAGAGAACTGTGGGGCTGATCTGAGCAAGGCCAAAACTTATCACAGGAGACACAAGGTCTGTGAGATGCATTCCAAGGCCAGTAAGGCACTTGTTGGCAATGTTCTTCAACGCTTCTGCCAGCAGTGCAGCAGGTTCCATGCACTTCAAGAGTTTGACGAAGGAAAGAGAAGTTGTCGTCGTCGTTTAGCTGGCCATAATAGGAGGAGGAGGAAAACAGAACCTGATGCTGTTGTCAATAGCAGTTCCGCAAATGATAACCAGGCTACTGGTTATCTCTTGATAAGTCTGCTAAAGTTACTTTCTGATATCCACTCCAACAGAACAGACCACACAGAGGATCAGGATCTGCTGGCTCATCTATTAAGAAACCTTGCCAGTGAGGGCAATCTGCACGAGGATATAAATATAGCTGGGCTTCTACAGGAATCTCTGAATAATTGTCCTCCTATTGGAAACTCAGATATCGTCTCTGCTTTGCTCTCTAATGGTCCTCATCATGGCCTGCAAAGACTTAAGCGGCAACAACATTGCACAATACCAGCATCATCTGAGATGACACAGAAAGGGTTACATGATGTGGATCATCATCATGCAAGGGTCGAAGAAATACAAAACCCAAAGTGTCAGACTCCTCCTGGCTTTCCTTTCAATGTCCAAGGCTCTCCTCCAATTTGCACAGAAAGAGCCAGGGATAGTTCTGCACAGAGGACAAAGTTGAATAACTTCGATCTGAATGACACATATATTGATTCAGTTGACTCCACTGAAGACCCACCTGTCCCTGCGACTGTTTCTCTCGATTGCCAACAAGACTCTCTTCAGTCAAGTCCCCCTCAGGCTAGTGGAAATTCAGATTCTGCATCCTCCCAGTCACCTTCTAGTTCCAGTGGTGATACTCAGAGTCGCACAGGTCGCATTGTTTTCAAAATATTTGGGAAGGAACCAAGTGATTTTCCATTTGTCCTGCGAGCACAGATACTTGATTGGTTATCTCACAGTCCTTCAGAGATTGAGAGCTACATAAGACCTGGTTGTATTATTTTAACTATATATCTGCGTTTATCTGAGTCTTCATGGGAGGAGCTTTGCTCTGATCTGAGTTCCAGCTTGAATAGGCTGATTGATGTCTCTGATGATGTCACCTTTTGGAGAACTGGATGGGTCTATGTCAGGGTGCAGAATCAAATAGCATTTATGTACAATGGTGAGGTTGTTGCGGACACATACTTACCTTTCAACAGCAGCAACTGTAGCACTATTCTAAGTGTCAAGCCTATTGCAGTATCAGTATCTGAAAAGGCTCAGTTTTTAGTTAAAGGATATAATATTTTACGGCCCTCCGCGAGGTTACTCTGTGGCTTAGAAGGTAATTATCTAGTTCAGGATCCTAATCATGATGAGTTGGTGGAGAGTGTAGACACCCTCAAAGAGGATGATGGGCTCCAGTGCCTCAACTTCTCTTGTTCTATCCCTGCAGCAACTGGAAGAGGTTTCATTGAGGTTGAAAATCATGCCGTAAATAGCAGCTTCTTTCCTTTCATAGTAGCTGAGAAAGATTTTTGCATGGAGATCCGAATGCTTGAGAGGGAGATAGATGATCTGACCGAGACTTATGATGTCCATGGTGGAACTGGGAAAACGGAAGCAAGGAGTAGGGCCATGGAATTTCTGCACGAAATGGGTTGGCTTCTTCATAGAAGCCACTTGAAGTCTAGATTGGGTCACTCAGATCTGAATTCAGAGCTCTTCTCATTCAAACGGTACAGGTGGCTCATGGAGTTCTCAATGGATCATGATTGGTGTGCTGTAGTCAGGAAACTACTGGACATACTTCTTGATGGAACTGTGGGTGCAGCAGGAGAGAATCACCCTTTCTTGAAACCTGCACTATTTGAGATGGGTCTCCTTCACAGAGCTGTACGCCGAAGTTCTAGGCCTATGGTGGAGCTCCTGTTGGGATACGTCCCTGACAAAGTTGCAGATGAACTAAGATTGGAGTACGAGTCTCTGCTGGTTGGAGGCGATGACAGCTTCTTGTTTAGACCTGATGTTGTAGGCCCTGCAGGTTTGACACCTCTTCATGTGGCAGCTGGTATAGACGGTTCTGAGAATGTACTAGATGCATTTACCAATGGGAAGGTGGGAATTGAAGCATGGAGGAATGCTCGTGACAGTACAGGTTCCACACCTGAAGATTGTGCTCGACTGCGGGGATGCTACTCATATATTCACCTTGTTCAAAGGAAAATTAACAAGAAACTAGTGACTGGGGATGTGGTAGTGGAGATTCCTACTGCCATCTCGGTCTGCAACGATGCCAAGGAGAAGAAAAATGAGGAGGGAGTGGCCAGTTTTCAGACTGAGATTAGAAGCATCATTAAGCGGCCTTGCAAACTCTGTGATCGGAAGCTGGTTTATGGAAATGGAAGCAACAGATCTCTGTTGTACAGGCCAGCAATGCTATCAATGGTGGCAGTAGCTGCTGTCTGTGTCTGCGTGGCTCTTCTCTTGAAAAGTTCGCCTGAAGTACTGTATGTACTCCGTCCCTTCAGGTGGGAAAGGTTGGAAGTTGGATATAGCTGATGAGACCAATTAACCCACGTATTTATGAGTGTGTTTGTATTTGTATGCACGTTTATAAATTGTAAAGTTGATATTTTCTGTAGGATTAGGTTCTAAACTAATTTTCATTTGTGTTATATTG

Network for GWHGAAZE000035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	133	203	2.20E-27

Protein Sequence

>GWHPAAZE000035
MATRTAEGKRAVEWDPTHWKWDGDLFLATPLNSNSPNNIYQSRQRQQLFPPLQTGGIIPMPRFSSNSSSSCSDEVNLGIQRATSKTELEKRRRVTLIEDDEEEAGSLSLKPAGAGLGEGHMRTTESEVVNWEENCGADLSKAKTYHRRHKVCEMHSKASKALVGNVLQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKTEPDAVVNSSSANDNQATGYLLISLLKLLSDIHSNRTDHTEDQDLLAHLLRNLASEGNLHEDINIAGLLQESLNNCPPIGNSDIVSALLSNGPHHGLQRLKRQQHCTIPASSEMTQKGLHDVDHHHARVEEIQNPKCQTPPGFPFNVQGSPPICTERARDSSAQRTKLNNFDLNDTYIDSVDSTEDPPVPATVSLDCQQDSLQSSPPQASGNSDSASSQSPSSSSGDTQSRTGRIVFKIFGKEPSDFPFVLRAQILDWLSHSPSEIESYIRPGCIILTIYLRLSESSWEELCSDLSSSLNRLIDVSDDVTFWRTGWVYVRVQNQIAFMYNGEVVADTYLPFNSSNCSTILSVKPIAVSVSEKAQFLVKGYNILRPSARLLCGLEGNYLVQDPNHDELVESVDTLKEDDGLQCLNFSCSIPAATGRGFIEVENHAVNSSFFPFIVAEKDFCMEIRMLEREIDDLTETYDVHGGTGKTEARSRAMEFLHEMGWLLHRSHLKSRLGHSDLNSELFSFKRYRWLMEFSMDHDWCAVVRKLLDILLDGTVGAAGENHPFLKPALFEMGLLHRAVRRSSRPMVELLLGYVPDKVADELRLEYESLLVGGDDSFLFRPDVVGPAGLTPLHVAAGIDGSENVLDAFTNGKVGIEAWRNARDSTGSTPEDCARLRGCYSYIHLVQRKINKKLVTGDVVVEIPTAISVCNDAKEKKNEEGVASFQTEIRSIIKRPCKLCDRKLVYGNGSNRSLLYRPAMLSMVAVAAVCVCVALLLKSSPEVLYVLRPFRWERLEVGYS

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.474
	SRR3591706	second leaf	51.920
	SRR3591707	mature leaf	67.988
	SRR3591708	Shoot apex	54.831
	SRR3591709	Stem	77.696
	SRR3591710	White floral bud	113.587
	SRR3591711	White flower	113.329
	SRR3591712	Green floral bud	74.392
	SRR3591713	Yellow flower	80.183
SRP173429	SRR8316895	Juvenile bud stage	28.287
	SRR8316896	Juvenile bud stage	36.260
	SRR8316897	Juvenile bud stage	16.187
	SRR8316894	Third green stage	15.633
	SRR8316900	Third green stage	37.887
	SRR8316901	Third green stage	39.391
	SRR8316898	Complete white stage	19.876
	SRR8316899	Complete white stage	68.373
	SRR8316903	Complete white stage	45.267
	SRR8316902	Silver flowering stage	21.680
	SRR8316904	Silver flowering stage	31.378
	SRR8316905	Silver flowering stage	13.403
	SRR8316906	Gold flowering stage	48.587
	SRR8316907	Gold flowering stage	46.010
	SRR8316908	Gold flowering stage	53.853
SRP132670	SRR6706286	Control	39.372
	SRR6706287	Light intensity 50%	41.603
	SRR6706288	Light intensity 20%	39.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.560
	CNS0095593	Slightly white alabastrum(diploid) 2	32.992
	CNS0095594	Slightly white alabastrum(diploid) 3	23.983
	CNS0095595	Whole white alabastrum(diploid) 2	24.212
	CNS0095596	Whole white alabastrum(diploid) 3	20.617
	CNS0095597	Whole white alabastrum(diploid) 4	26.143
	CNS0095598	Silvery flower (diploied) 1	49.912
	CNS0095599	Silvery flower (diploied) 2	39.280
	CNS0095600	Silvery flower (diploied) 3	60.119
	CNS0095601	Golden flower (diploid) 1	42.483
	CNS0095602	Golden flower (diploid) 2	59.860
	CNS0095603	Golden flower (diploid) 3	57.262
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.309
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.022
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.095
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.379
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.581
	CNS0095610	Silvery flower (diploied) 1	68.716
	CNS0095611	Silvery flower (diploied) 2	62.281
	CNS0095612	Silvery flower (diploied) 3	110.268
	CNS0095613	Golden flower (tetraploid) 1	50.938
	CNS0095614	Golden flower (tetraploid) 2	57.582
	CNS0095615	Golden flower (tetraploid) 3	77.851
CRA001975	CRR073297	Stem 1	52.041
	CRR073298	Stem 2	48.953
	CRR073299	Stem 3	44.553
	CRR073300	Leaf 1	64.038
	CRR073301	Leaf 2	56.358
	CRR073302	Leaf 3	40.463
	CRR073303	Juvenile bud 1	56.989
	CRR073304	Juvenile bud 2	44.914
	CRR073305	Juvenile bud 3	80.177
	CRR073306	Third green 1	60.094
	CRR073307	Third green 2	39.746
	CRR073308	Third green 3	53.538
	CRR073309	Second white 1	54.001
	CRR073310	Second white 2	53.514
	CRR073311	Second white 3	68.254
	CRR073312	Silver flowering 1	68.958
	CRR073313	Silver flowering 2	69.741
	CRR073314	Silver flowering 3	53.710
	CRR073315	Gold flowering 1	33.008
	CRR073316	Gold flowering 2	54.722
	CRR073317	Gold flowering 3	40.221
	CRR073318	Tawny withering 1	45.286
	CRR073319	Tawny withering 2	36.137
	CRR073320	Tawny withering 3	38.405