Gene detail

Detail information of GWHGAAZE000038

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW61378.1	0	hypothetical protein EUGRSUZ_H04112 [Eucalyptus grandis]
COG	YP_001179664.1	5E-157	S-adenosylmethionine synthetase
Swissprot	tr\|Q9AT55\|METK2_ELAUM	0	S-adenosylmethionine synthase 2
trEMBL	tr\|A0A059B5H9\|A0A059B5H9_EUCGR	0	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}
TAIR10	AT3G17390.1	0	S-adenosylmethionine synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1078600	1079781	-
GWHAAZE00000001	mRNA	1078600	1079781	-
GWHAAZE00000001	exon	1078600	1079781	-
GWHAAZE00000001	CDS	1078600	1079781	-

Transcript Sequence
>GWHTAAZE000038 ATGGAGACCTTCCTATTTACCTCCGAGTCTGTGAACGAGGGCCACCCTGACAAGCTCTGTGATCAGATCTCCGATGCGGTACTTGATGCCTGCCTTGCCCAGGATACCGAAAGCAAGGTTGCCTGCGAGACTTGCACCAAGACCAACATGGTCATGGTTTTTGGAGAGATCACTACCAAGGCCAACATCGACTATGAGAAGATTGTGCGTGACACCTGCCGTGGGATTGGATTTGTTTCCGCAGATCTGGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTAACATCGAGCGGCAGAGCCCTGATATTGCCCAGGGTGTCCATGGCCACCTTACTAAGCGCCCAGAGGAGATCGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACTGATGAGACCCCTGAACTTATGCCGCTAAGCCATGTCCTTGCAACCAAGCTCGGGGCTCGTCTCACCGAGGTTCGGAAGATTGGCACCTGCCCCTGGCTGAGACCTGATGGCAAGACACAAGTTACTGTAGAGTACTACAATGAAAAAGGTGCCATGGTTCCAGTACGTGTGCACACCATCCTCATCTCCACCCAGCACGATGAGACTGTCACCAATGATGAGATTGCTGCTGACCTCAAGGAGCACGTCATCAAGCCTGTGGTACCTGAGAAATACCTTGATGAGAAGACCATCTTCCACCTCAACCCTTCAGGCCGCTTTGTCATTGGTGGGCCTCACGGGGATGCAGGTCTTACCGGGCGTAAGATCATTATTGACACTTACGGTGGCTGGGGAGCCCACGGTGGTGGGGCTTTCTCCGGCAAGGACCCCACCAAGGTGGACAGAAGTGGAGCGTACATCGTCAGACAGGCTGCCAAGAGCATTGTAGCGAATGGACTTGCACGTAGGTGCATTGTGCAGGTGTCTTATGCAATTGGTGTTCCTGAGCCTTTATCAGTTTTTGTTGACAGTTACGGAACTGGAAAGATTCCAGACAAGGAGATCCTCAAGATTGTGAAGGAGACATTTGACTTCAGGCCTGGAATGATAGCAATTAATCTGGATCTGAAGAGGGGTGGTAACGGCAGGTTCTTGAAGACAGCTGCATACGGACACTTCGGAAGAGACGACCCAGACTTCACCTGGGAGGTGGTGAAGCCCCTCAAATGGGAGAAGCCGCAAGCTTGA

Network for GWHGAAZE000038

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00438.21	S-AdoMet_synt_N	4	101	1.10E-41
PF02772.17	S-AdoMet_synt_M	117	238	3.70E-47
PF02773.17	S-AdoMet_synt_C	240	381	2.30E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00789	metK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006556	biological_process	S-adenosylmethionine biosynthetic process
GO:0004478	molecular_function	methionine adenosyltransferase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.489
	SRR3591706	second leaf	7.797
	SRR3591707	mature leaf	34.554
	SRR3591708	Shoot apex	0.620
	SRR3591709	Stem	5.546
	SRR3591710	White floral bud	1.719
	SRR3591711	White flower	1.433
	SRR3591712	Green floral bud	2.728
	SRR3591713	Yellow flower	1.287
SRP173429	SRR8316895	Juvenile bud stage	0.479
	SRR8316896	Juvenile bud stage	0.197
	SRR8316897	Juvenile bud stage	0.166
	SRR8316894	Third green stage	0.050
	SRR8316900	Third green stage	1.476
	SRR8316901	Third green stage	0.713
	SRR8316898	Complete white stage	0.839
	SRR8316899	Complete white stage	4.535
	SRR8316903	Complete white stage	0.695
	SRR8316902	Silver flowering stage	2.387
	SRR8316904	Silver flowering stage	1.827
	SRR8316905	Silver flowering stage	1.082
	SRR8316906	Gold flowering stage	1.137
	SRR8316907	Gold flowering stage	1.719
	SRR8316908	Gold flowering stage	1.920
SRP132670	SRR6706286	Control	1.279
	SRR6706287	Light intensity 50%	1.386
	SRR6706288	Light intensity 20%	1.800
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.078
	CNS0095593	Slightly white alabastrum(diploid) 2	1.533
	CNS0095594	Slightly white alabastrum(diploid) 3	1.575
	CNS0095595	Whole white alabastrum(diploid) 2	1.656
	CNS0095596	Whole white alabastrum(diploid) 3	0.616
	CNS0095597	Whole white alabastrum(diploid) 4	1.314
	CNS0095598	Silvery flower (diploied) 1	1.065
	CNS0095599	Silvery flower (diploied) 2	0.301
	CNS0095600	Silvery flower (diploied) 3	0.370
	CNS0095601	Golden flower (diploid) 1	0.204
	CNS0095602	Golden flower (diploid) 2	0.278
	CNS0095603	Golden flower (diploid) 3	0.405
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.233
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.867
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.775
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.856
	CNS0095610	Silvery flower (diploied) 1	2.429
	CNS0095611	Silvery flower (diploied) 2	0.277
	CNS0095612	Silvery flower (diploied) 3	0.810
	CNS0095613	Golden flower (tetraploid) 1	0.557
	CNS0095614	Golden flower (tetraploid) 2	0.546
	CNS0095615	Golden flower (tetraploid) 3	0.100
CRA001975	CRR073297	Stem 1	0.557
	CRR073298	Stem 2	0.344
	CRR073299	Stem 3	0.525
	CRR073300	Leaf 1	1.446
	CRR073301	Leaf 2	1.215
	CRR073302	Leaf 3	2.033
	CRR073303	Juvenile bud 1	3.802
	CRR073304	Juvenile bud 2	1.600
	CRR073305	Juvenile bud 3	5.158
	CRR073306	Third green 1	4.690
	CRR073307	Third green 2	3.593
	CRR073308	Third green 3	3.853
	CRR073309	Second white 1	2.616
	CRR073310	Second white 2	1.724
	CRR073311	Second white 3	0.933
	CRR073312	Silver flowering 1	2.062
	CRR073313	Silver flowering 2	5.868
	CRR073314	Silver flowering 3	2.780
	CRR073315	Gold flowering 1	44.628
	CRR073316	Gold flowering 2	31.248
	CRR073317	Gold flowering 3	67.493
	CRR073318	Tawny withering 1	119.538
	CRR073319	Tawny withering 2	179.524
	CRR073320	Tawny withering 3	139.419