Gene detail

Detail information of GWHGAAZE000476

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009599092.1	0	PREDICTED: serine/threonine-protein kinase MHK-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|P43294\|MHK_ARATH	0	Serine/threonine-protein kinase MHK
trEMBL	tr\|M1BSK8\|M1BSK8_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051979}
TAIR10	AT4G13020.2	1E-165	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	9052943	9056630	-
GWHAAZE00000001	mRNA	9052943	9056630	-
GWHAAZE00000001	exon	9052943	9053075	-
GWHAAZE00000001	exon	9053166	9053305	-
GWHAAZE00000001	exon	9053361	9053406	-
GWHAAZE00000001	exon	9053607	9053757	-
GWHAAZE00000001	exon	9053856	9053919	-
GWHAAZE00000001	exon	9054015	9054083	-
GWHAAZE00000001	exon	9054169	9054234	-
GWHAAZE00000001	exon	9054324	9054432	-
GWHAAZE00000001	exon	9055386	9055452	-
GWHAAZE00000001	exon	9055601	9055653	-
GWHAAZE00000001	exon	9055768	9055870	-
GWHAAZE00000001	exon	9055964	9056102	-
GWHAAZE00000001	exon	9056176	9056265	-
GWHAAZE00000001	exon	9056376	9056444	-
GWHAAZE00000001	exon	9056532	9056630	-
GWHAAZE00000001	CDS	9056532	9056630	-
GWHAAZE00000001	CDS	9056376	9056444	-
GWHAAZE00000001	CDS	9056176	9056265	-
GWHAAZE00000001	CDS	9055964	9056102	-
GWHAAZE00000001	CDS	9055768	9055870	-
GWHAAZE00000001	CDS	9055601	9055653	-
GWHAAZE00000001	CDS	9055386	9055452	-
GWHAAZE00000001	CDS	9054324	9054432	-
GWHAAZE00000001	CDS	9054169	9054234	-
GWHAAZE00000001	CDS	9054015	9054083	-
GWHAAZE00000001	CDS	9053856	9053919	-
GWHAAZE00000001	CDS	9053607	9053757	-
GWHAAZE00000001	CDS	9053361	9053406	-
GWHAAZE00000001	CDS	9053166	9053305	-
GWHAAZE00000001	CDS	9052943	9053075	-

Transcript Sequence
>GWHTAAZE000478 ATGTGGCATTATTCTTCTAGATATAAAATTTTGAAAGAGCTTGGAGATGGAACTTGCGGTAGTGTATATATGGCCATTAATATGGAAAACTCTGAGATTGTTGCAGTCAAGAAAATGAAGAGAAAGTTTTATTTCTGGGAAGAATGTGTGAATTTACGGGAAGTTAAGGCCCTCCGTAAATTGAATCATCCCAATATTATAAAGTTGAAGGAGATTGTCAGGGAAAATAATGAGCTGTTCTTCATATTTGAATACATGGAACATAATTTGTACCAAATAATGAGGGAAAGGCAAAGACCATTCGAAGAGGGAGAGATTAGATGCTTGATGTCTCAGATGCTGCAGGGACTTGTTCACATGCATAAAAATGGATACTTTCACCGGGACTTAAAACCCGAGAATCTGCTGGTGACGAATGACGTTATTAAAATTGCCGACTTTGGACTGGCTAGAGAAGTGTTGTCAATGCCTCCTTTTACTGATTATGTTTCCACCCGGTGGTATCGAGCCCCAGAAGTCTTGTTGCAATCTTCAGTTTACACTCCTGCCATTGACATGTGGGCAGTTGGTGCAATACTAACTGAACTTTTCACTTCGTGCCCCGTTTTCCCAGGTGAAAGTGAGCTGGATCAATTGTACAAGATATGCTGTGTTCTTGGGACCCCAGATTGGACTACCTTTCCTGAAGCTAGAAATGTTTCTGGTTTAATCAGTATCAGTAATGCAGAGATTATGCCTGCCAATCTCTCAGATCTTATGCCGAATGCAAGCTTGGAAGCAATTGACTTGATTAAGCTACTTTGTTCATGGGACCCAAGCAGGAGGCCAACTGCAGATCAATGCTTACAGCATCCATTTTTCTATGTTGGTATGTGGATTCCTCGTCCACTTAAGGGGGATCCACTTCAGCTGAAGCTAAATAACATGGGAGCCTCGCCAAGCCTGGAGTTAAACCTCTGGGACTTTGACACTGAAACGGATGATTGTTTTCTTGGCTTGACCCTGGCCGTGAACCCCAGTGTTTCCAACTTGGGTAATGAAAAACTCTCTCTCTCTCTCTCCCACCCATGCAATTGCATGATCTACTGTTTTGCTCTGGTTTTGAGGATCACACACAGCAGTCAGGTTTCAATTTTCTTTTCAGTGAAGCAATTAAATCTTAATAAGTTTAGCTTCTGCCACTTTCCAGTTTTTTGGTCACTGCTTCCTCCTGATCACCATGGAATTAGGGCACCAGTTGATTCTTCGCTATCCTTATCTTTTAGTCCGGTTCCTCATTCATCACCAATTGGCGTTCCAGAATCAAGAGGATTTGCTATGTCATCGTTGCAGCCTAACATCCTGGATCGGACATTCTTGACTATGTCCTCTCCCTTCCAGCAGGGTCAATGCCTTTGA

Network for GWHGAAZE000476

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	8	287	5.10E-74

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_RCK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.532
	SRR3591706	second leaf	24.563
	SRR3591707	mature leaf	26.325
	SRR3591708	Shoot apex	32.315
	SRR3591709	Stem	42.232
	SRR3591710	White floral bud	22.381
	SRR3591711	White flower	23.307
	SRR3591712	Green floral bud	28.873
	SRR3591713	Yellow flower	37.869
SRP173429	SRR8316895	Juvenile bud stage	17.347
	SRR8316896	Juvenile bud stage	25.607
	SRR8316897	Juvenile bud stage	12.278
	SRR8316894	Third green stage	12.408
	SRR8316900	Third green stage	33.270
	SRR8316901	Third green stage	34.722
	SRR8316898	Complete white stage	11.259
	SRR8316899	Complete white stage	25.757
	SRR8316903	Complete white stage	16.498
	SRR8316902	Silver flowering stage	10.781
	SRR8316904	Silver flowering stage	14.304
	SRR8316905	Silver flowering stage	6.901
	SRR8316906	Gold flowering stage	29.118
	SRR8316907	Gold flowering stage	26.078
	SRR8316908	Gold flowering stage	26.865
SRP132670	SRR6706286	Control	14.522
	SRR6706287	Light intensity 50%	16.320
	SRR6706288	Light intensity 20%	17.580
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.632
	CNS0095593	Slightly white alabastrum(diploid) 2	24.291
	CNS0095594	Slightly white alabastrum(diploid) 3	28.018
	CNS0095595	Whole white alabastrum(diploid) 2	31.494
	CNS0095596	Whole white alabastrum(diploid) 3	35.927
	CNS0095597	Whole white alabastrum(diploid) 4	27.413
	CNS0095598	Silvery flower (diploied) 1	21.678
	CNS0095599	Silvery flower (diploied) 2	18.862
	CNS0095600	Silvery flower (diploied) 3	18.655
	CNS0095601	Golden flower (diploid) 1	21.483
	CNS0095602	Golden flower (diploid) 2	20.482
	CNS0095603	Golden flower (diploid) 3	19.863
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.765
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.093
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.979
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.144
	CNS0095610	Silvery flower (diploied) 1	24.626
	CNS0095611	Silvery flower (diploied) 2	17.533
	CNS0095612	Silvery flower (diploied) 3	15.036
	CNS0095613	Golden flower (tetraploid) 1	16.480
	CNS0095614	Golden flower (tetraploid) 2	25.050
	CNS0095615	Golden flower (tetraploid) 3	21.063
CRA001975	CRR073297	Stem 1	26.832
	CRR073298	Stem 2	25.904
	CRR073299	Stem 3	17.265
	CRR073300	Leaf 1	35.590
	CRR073301	Leaf 2	31.354
	CRR073302	Leaf 3	16.945
	CRR073303	Juvenile bud 1	19.180
	CRR073304	Juvenile bud 2	12.302
	CRR073305	Juvenile bud 3	14.303
	CRR073306	Third green 1	3.518
	CRR073307	Third green 2	5.451
	CRR073308	Third green 3	5.209
	CRR073309	Second white 1	2.473
	CRR073310	Second white 2	7.014
	CRR073311	Second white 3	7.521
	CRR073312	Silver flowering 1	5.714
	CRR073313	Silver flowering 2	3.681
	CRR073314	Silver flowering 3	5.814
	CRR073315	Gold flowering 1	5.197
	CRR073316	Gold flowering 2	12.338
	CRR073317	Gold flowering 3	3.620
	CRR073318	Tawny withering 1	22.743
	CRR073319	Tawny withering 2	20.647
	CRR073320	Tawny withering 3	18.419