Gene detail

Detail information of GWHGAAZE000542

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266252.1	0	PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Vitis vinifera]
Swissprot	tr\|Q9LSV0\|GLYR1_ARATH	2E-170	Glyoxylate/succinic semialdehyde reductase 1
trEMBL	tr\|A5BEM8\|A5BEM8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78910.1}
TAIR10	AT3G25530.1	7E-118	glyoxylate reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	10840295	10845725	+
GWHAAZE00000001	mRNA	10840295	10845725	+
GWHAAZE00000001	exon	10840295	10840402	+
GWHAAZE00000001	exon	10842763	10842873	+
GWHAAZE00000001	exon	10842958	10843059	+
GWHAAZE00000001	exon	10843189	10843290	+
GWHAAZE00000001	exon	10843907	10844022	+
GWHAAZE00000001	exon	10844506	10844584	+
GWHAAZE00000001	exon	10844674	10844844	+
GWHAAZE00000001	exon	10845636	10845725	+
GWHAAZE00000001	CDS	10840295	10840402	+
GWHAAZE00000001	CDS	10842763	10842873	+
GWHAAZE00000001	CDS	10842958	10843059	+
GWHAAZE00000001	CDS	10843189	10843290	+
GWHAAZE00000001	CDS	10843907	10844022	+
GWHAAZE00000001	CDS	10844506	10844584	+
GWHAAZE00000001	CDS	10844674	10844844	+
GWHAAZE00000001	CDS	10845636	10845725	+

Transcript Sequence
>GWHTAAZE000544 ATGGAGGAAATAGGGTTTTTAGGATTGGGAATCATGGGGAAGGCTATGTCCATGAATTTGCTCAAACATGGCTTTAAGGTCACTGTTTGGAACCGCACTCTATCTCGGTGTGATGAGCTGGTGGAGCATGGTGCATCTGTTGAAAAAACTCCCGCGGCAGTTGTCAAGAAGTGCAAGTATACCATTGCAATGTTATCTGATCCTGAGGCTGCCCTTTCGGTGGTATTTGATAAAGATGGCATTCTTGAGCAAATTGGCGGTGGAAAAGGTTACATTGATATGTCAACAGTTGATGCGGATACTTCTTCAAAGATCAGCGAGGCAATTTCATCAAAGAGTGGTTACTTTCTGGAAGCTCCAGTTTCGGGTAGCAAAAAGCCTGCTGAAGATGGTCAATTGGTAATCCTTGCTGCTGGGGAGAAGGCATTGTACGAGGAAGTACTTCCAGCATTCGATGTCTTGGGGAAGAAGTCCTTTTACTTGGGGAAGGTTGGAAATGGAGCGAAAATGAAACTTGTTGTCAATATGATAATGGGAAGCATGATAAATGCATTCTCAGAAGGACTTGTACTGGCTGACAAAAGTGGACTAAACCCTCACACCCTGCTTGATGTGTTGGACCTTGGTGGAATTGCTAATCCAATGTTCAGGATGAAAGGACCAACTATGATAGGGAACAATTACACACCAGCATTTCCTCTTAAACATCAGCAGAAGGATATGAGGTTGGCTCTTTCCCTTGGGGATGAAAATGCTGTAGCTATGCCAGTAGCAGCTGCTGCCAATGAGGCATTCAAGAAGGCAAGAAGCGTTGGATTGGGGGACCTTGACTTCTCAGCTGTGTATGAGATTGTTAAGGTTGCTGAAAGTTCATCGTGA

Network for GWHGAAZE000542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03446.16	NAD_binding_2	3	162	1.90E-40
PF14833.7	NAD_binding_11	165	284	3.40E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18121	GLYR	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Butanoate metabolism	map00650

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0051287	molecular_function	NAD binding
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	140.068
	SRR3591706	second leaf	134.737
	SRR3591707	mature leaf	161.599
	SRR3591708	Shoot apex	130.018
	SRR3591709	Stem	115.925
	SRR3591710	White floral bud	91.164
	SRR3591711	White flower	82.613
	SRR3591712	Green floral bud	99.801
	SRR3591713	Yellow flower	60.940
SRP173429	SRR8316895	Juvenile bud stage	79.961
	SRR8316896	Juvenile bud stage	116.242
	SRR8316897	Juvenile bud stage	61.706
	SRR8316894	Third green stage	45.019
	SRR8316900	Third green stage	129.750
	SRR8316901	Third green stage	136.039
	SRR8316898	Complete white stage	57.765
	SRR8316899	Complete white stage	178.688
	SRR8316903	Complete white stage	91.718
	SRR8316902	Silver flowering stage	47.671
	SRR8316904	Silver flowering stage	57.110
	SRR8316905	Silver flowering stage	26.322
	SRR8316906	Gold flowering stage	94.265
	SRR8316907	Gold flowering stage	94.439
	SRR8316908	Gold flowering stage	99.551
SRP132670	SRR6706286	Control	139.546
	SRR6706287	Light intensity 50%	148.767
	SRR6706288	Light intensity 20%	154.324
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	109.364
	CNS0095593	Slightly white alabastrum(diploid) 2	109.412
	CNS0095594	Slightly white alabastrum(diploid) 3	109.511
	CNS0095595	Whole white alabastrum(diploid) 2	102.069
	CNS0095596	Whole white alabastrum(diploid) 3	95.848
	CNS0095597	Whole white alabastrum(diploid) 4	85.370
	CNS0095598	Silvery flower (diploied) 1	114.649
	CNS0095599	Silvery flower (diploied) 2	95.386
	CNS0095600	Silvery flower (diploied) 3	120.588
	CNS0095601	Golden flower (diploid) 1	103.176
	CNS0095602	Golden flower (diploid) 2	108.963
	CNS0095603	Golden flower (diploid) 3	109.580
	CNS0095604	Slightly white alabastrum(tetraploid) 1	129.803
	CNS0095605	Slightly white alabastrum(tetraploid) 2	121.616
	CNS0095606	Slightly white alabastrum(tetraploid) 3	161.697
	CNS0095607	Whole white alabastrum(tetraploid) 1	91.722
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.800
	CNS0095609	Whole white alabastrum(tetraploid) 3	134.143
	CNS0095610	Silvery flower (diploied) 1	146.775
	CNS0095611	Silvery flower (diploied) 2	139.968
	CNS0095612	Silvery flower (diploied) 3	103.619
	CNS0095613	Golden flower (tetraploid) 1	129.647
	CNS0095614	Golden flower (tetraploid) 2	148.967
	CNS0095615	Golden flower (tetraploid) 3	83.839
CRA001975	CRR073297	Stem 1	109.352
	CRR073298	Stem 2	103.594
	CRR073299	Stem 3	94.713
	CRR073300	Leaf 1	120.796
	CRR073301	Leaf 2	131.477
	CRR073302	Leaf 3	111.713
	CRR073303	Juvenile bud 1	111.830
	CRR073304	Juvenile bud 2	130.800
	CRR073305	Juvenile bud 3	94.949
	CRR073306	Third green 1	52.317
	CRR073307	Third green 2	49.954
	CRR073308	Third green 3	43.196
	CRR073309	Second white 1	34.607
	CRR073310	Second white 2	46.403
	CRR073311	Second white 3	39.397
	CRR073312	Silver flowering 1	26.319
	CRR073313	Silver flowering 2	12.446
	CRR073314	Silver flowering 3	23.571
	CRR073315	Gold flowering 1	123.321
	CRR073316	Gold flowering 2	150.843
	CRR073317	Gold flowering 3	79.030
	CRR073318	Tawny withering 1	75.317
	CRR073319	Tawny withering 2	64.504
	CRR073320	Tawny withering 3	73.900