Gene detail

Detail information of GWHGAAZE000560

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007017104.1	Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
Swissprot	tr\|C0LGD7\|Y1684_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (Precursor)
trEMBL	tr\|A0A061GZ11\|A0A061GZ11_THECC	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY34723.1}
TAIR10	AT1G06840.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	11231566	11244289	-
GWHAAZE00000001	mRNA	11231566	11244289	-
GWHAAZE00000001	exon	11231566	11231910	-
GWHAAZE00000001	exon	11233403	11233653	-
GWHAAZE00000001	exon	11234089	11234140	-
GWHAAZE00000001	exon	11234755	11235038	-
GWHAAZE00000001	exon	11236193	11236264	-
GWHAAZE00000001	exon	11236857	11237461	-
GWHAAZE00000001	exon	11237565	11237651	-
GWHAAZE00000001	exon	11237801	11237872	-
GWHAAZE00000001	exon	11237962	11238030	-
GWHAAZE00000001	exon	11238295	11238363	-
GWHAAZE00000001	exon	11239128	11239202	-
GWHAAZE00000001	exon	11239725	11239796	-
GWHAAZE00000001	exon	11239877	11239948	-
GWHAAZE00000001	exon	11240319	11240462	-
GWHAAZE00000001	exon	11240716	11240787	-
GWHAAZE00000001	exon	11240934	11241005	-
GWHAAZE00000001	exon	11241804	11241954	-
GWHAAZE00000001	exon	11242582	11242658	-
GWHAAZE00000001	exon	11242761	11242780	-
GWHAAZE00000001	exon	11244146	11244289	-
GWHAAZE00000001	CDS	11244146	11244289	-
GWHAAZE00000001	CDS	11242761	11242780	-
GWHAAZE00000001	CDS	11242582	11242658	-
GWHAAZE00000001	CDS	11241804	11241954	-
GWHAAZE00000001	CDS	11240934	11241005	-
GWHAAZE00000001	CDS	11240716	11240787	-
GWHAAZE00000001	CDS	11240319	11240462	-
GWHAAZE00000001	CDS	11239877	11239948	-
GWHAAZE00000001	CDS	11239725	11239796	-
GWHAAZE00000001	CDS	11239128	11239202	-
GWHAAZE00000001	CDS	11238295	11238363	-
GWHAAZE00000001	CDS	11237962	11238030	-
GWHAAZE00000001	CDS	11237801	11237872	-
GWHAAZE00000001	CDS	11237565	11237651	-
GWHAAZE00000001	CDS	11236857	11237461	-
GWHAAZE00000001	CDS	11236193	11236264	-
GWHAAZE00000001	CDS	11234755	11235038	-
GWHAAZE00000001	CDS	11234089	11234140	-
GWHAAZE00000001	CDS	11233403	11233653	-
GWHAAZE00000001	CDS	11231566	11231910	-

Transcript Sequence
>GWHTAAZE000562 ATGAAGGGAGACAACCCTTCGGACACCTTCTCCGGAGGAAGCGCCTCCGCCGCCCCCGGCAAATCCAAGATGTGGCCGGAGGAATCCCACCATGATGCAGGGTTACACGAGCTCCTTGCCGCATTAGGCTACAAAGTGGGAGGGGTCACAGGTGAAGAGTTCGGAGCGGTTTTCGTTGCGGGAATGTTCTGGTGTTTAGCACTTGTTGTAGCACAAAGCAGTGTTACCCACCCAGAAGAAGTGACAGCATTACGGGCCATTAAGAAAAATTTGATTGATACGAACCGGAATCTCACCAACTGGAATCGTGAAGATCCGTGTACATCGAACTGGACGGGCGTCTTCTGCTTCAATACGACAATGGATGATGGCTATTTGCATGTTAGAGAATTGCATCTTTGGGATATGAATCTTGGAGGAAGTCTATCACCAGAGCTAGGTCGCTTATCATATATGAAAATATTGGATTTTATGTGGAACAAGATAAGTGGGAGTATACCCAAGGAGATAGGGAATATTACGTCTTTGGAACTCTTGCTCCTGAATGGGAATCAACTAACAGGTTCCTTGCCGGAAGAGATCGGTTATCTTCCTAACCTGGACAGGATTCAAATTGACCAGAACCAAATATCTGGACCAATACCTATGTCGTTTGCAAAATTGAACAAAACAAAGCACCTCCACATGAATAACAATTCAATTAGCGGCCAAATCCCTCCTGAGCTGTACGCATTACGAAGTCTTGTTCACTTGCTCCTTGACAATAACAACTTATCTGGGTATCTTCCACCAGAGCTTGCTGAAATGCCAAATCTACTTATACTTCAACTTGATAACAACCACTTTGATGGGAGTACAATACCTGCTGCTTATGGCAACATGTCTCGCTTGTTGAAGTTGAGTCTAAGGAACTGCAGCTTGCAAGGACCAATCCCTGACTTAAGCAGGATACCAAAGCTTGCTTATATAGACCTTAGTTCAAACCAACTCAATGGATCAATACCTACAGATAAGCTTTCCGAGGAAATCACTACTATTGATCTATCGCAGAATAAACTTACTGGAACTATCCCTGCCAATTTTTCTGGCCTTCCTCTTCTTCAAAGATTGTCTCTTTTGAACAATTCATTGAATGGCTCTGTTCCATCCGCTATTTGGCAAAATAGGACTTTCAACACAAGTGATAGACTCATCTTGGATTTGCAAAACAATATGTTCTCAAATGTTTTGGGCAGTCTTAATCTCCCTCAAAATGTCACTCTCAGGCTTGAAGGGAATCCTATGTGCTCGAACACCAACTTGGTCCAGTTCTGTGGAACTCAGAGTGAAGATGATATTGATTCCCAGAGCTTGAAATTCTCCACCGTTGGTCATATCCAAAGCAGAAAAATCTCCACCATAGCTTGTCCCACTCAAGCATGCCCACCACCTTATGAATATGCTCCAGATTCTCCTGAACCTTGCTTCTGTGCTGCACCTCTTCTTGTTGGGTATCGATTGAAAAGTCCTGGGTTTTCAATTTTTTTGCCTTATAGGTATCAATTTGAGGTGTACTTAACCTCTGGTCTCAAATTAAACCTTTATCAACTACACATCGATTCATCTGAATGGCAAAGAGGCCCTCGACTGAGGATGTACTTAAAGCTTTTTCCGGTTTACATTGATAATACTTCTCACATCTTCAATAGAAGTGAAGTCTTAAGAATTCAGAGCTTGTTCACAGGATGGACGATTCCTGGTAATAGGATTTTCGGACCTTATGAACTCCTCAACTTCACGCTATTGGGCCCTTATAAAGATGTGATTCCCACCTCCTCAAGATCTGGTATAAGCAAGGGTCAATTAGCTGGCATTGTATTAGGGACGATCATAGTGTCTAAAATGTCCATTAAAATTACTGATGTGAAAAGCTTCACTTATGATGAAATGACAAGGGCAACAAGCAATTTCAGTAGCTCCGCTCAAGTTGGACAAGGAGGATATGGAAAGGTCTATAAAGGAATAATAGCCGATGGTACAATTGTGGCCATAAAACGGGTCGCAGAGGGATCATTACAGGGTGAAAGGGAGTTTCTTACAGAAATTGAATTGTTGTCGAGGTTACATCATCGGAACTTGGTTTCTTTGATTGGATATTGTGATGAAGAAGGTGAACAGATGTTGGTTTATGAGTTCATTCCTAACGGTACCTTGCGGAATCACCTATCTGGGAGGTCTAAAGAGCCTTTGAATTTTGCTACGAGATTGACAATCGCATTGGGTTCAGCCAAGGGCATCCTATATCTACACACAGAAGCTGATCCTCCCATATTCCATAGAGATATCAAGGCTAGCAACATCTTAATTGACACAAACTTCAATGCAAAAGTTGCCGATTTTGGACTCTCACGGCTCGCACCAGTTCCTGATAATGAAGGGACTGTGCCTGCTCATGTTTCTACCGTTGTTAGGGGGACTCCGGTGAACATGGCGCATCGATCAGGTATAATATTCTCCGTGATTGATGAACAGATGGGATCTTATCCTAGTGAGTGCGTTGAAAATTTTGTGAATTTGGCCCTCAACTGTTGCCAAGAAGATACAGATTTGCGGCCTTCAATGGCACAAGTGGTTCGAGAACTTGAAAGAATATGTGATATGATGCCCGAATCTGAGACCACAATTACACAATCGTCTATTACTGACAGTGGAAGCATCGTAGGCCCACGATCTTCATCATCTACAGTGGAGAATCCTTTTCTTTCATCAGACGTATCTGGTGGTGAGCTTGTAAGCGGAGCCGTGCCTGTTATTACACCTAGATGA

Network for GWHGAAZE000560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	78	116	2.80E-07
PF13855.7	LRR_8	198	258	2.70E-06
PF07714.18	PK_Tyr_Ser-Thr	653	799	1.90E-32

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.471
	SRR3591706	second leaf	2.935
	SRR3591707	mature leaf	5.879
	SRR3591708	Shoot apex	5.096
	SRR3591709	Stem	7.528
	SRR3591710	White floral bud	6.488
	SRR3591711	White flower	14.250
	SRR3591712	Green floral bud	4.559
	SRR3591713	Yellow flower	39.859
SRP173429	SRR8316895	Juvenile bud stage	1.985
	SRR8316896	Juvenile bud stage	3.884
	SRR8316897	Juvenile bud stage	2.058
	SRR8316894	Third green stage	1.447
	SRR8316900	Third green stage	3.266
	SRR8316901	Third green stage	3.033
	SRR8316898	Complete white stage	2.485
	SRR8316899	Complete white stage	4.123
	SRR8316903	Complete white stage	5.652
	SRR8316902	Silver flowering stage	7.115
	SRR8316904	Silver flowering stage	11.986
	SRR8316905	Silver flowering stage	5.877
	SRR8316906	Gold flowering stage	46.410
	SRR8316907	Gold flowering stage	40.227
	SRR8316908	Gold flowering stage	52.044
SRP132670	SRR6706286	Control	1.939
	SRR6706287	Light intensity 50%	2.229
	SRR6706288	Light intensity 20%	2.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.999
	CNS0095593	Slightly white alabastrum(diploid) 2	3.004
	CNS0095594	Slightly white alabastrum(diploid) 3	3.718
	CNS0095595	Whole white alabastrum(diploid) 2	3.201
	CNS0095596	Whole white alabastrum(diploid) 3	1.384
	CNS0095597	Whole white alabastrum(diploid) 4	1.778
	CNS0095598	Silvery flower (diploied) 1	6.210
	CNS0095599	Silvery flower (diploied) 2	5.480
	CNS0095600	Silvery flower (diploied) 3	9.074
	CNS0095601	Golden flower (diploid) 1	4.213
	CNS0095602	Golden flower (diploid) 2	13.618
	CNS0095603	Golden flower (diploid) 3	12.893
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.295
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.149
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.021
	CNS0095610	Silvery flower (diploied) 1	8.971
	CNS0095611	Silvery flower (diploied) 2	5.525
	CNS0095612	Silvery flower (diploied) 3	14.073
	CNS0095613	Golden flower (tetraploid) 1	21.444
	CNS0095614	Golden flower (tetraploid) 2	14.357
	CNS0095615	Golden flower (tetraploid) 3	25.583
CRA001975	CRR073297	Stem 1	2.976
	CRR073298	Stem 2	2.611
	CRR073299	Stem 3	1.904
	CRR073300	Leaf 1	3.316
	CRR073301	Leaf 2	2.888
	CRR073302	Leaf 3	2.534
	CRR073303	Juvenile bud 1	1.976
	CRR073304	Juvenile bud 2	1.044
	CRR073305	Juvenile bud 3	2.473
	CRR073306	Third green 1	30.559
	CRR073307	Third green 2	20.043
	CRR073308	Third green 3	26.922
	CRR073309	Second white 1	25.315
	CRR073310	Second white 2	39.674
	CRR073311	Second white 3	55.401
	CRR073312	Silver flowering 1	64.046
	CRR073313	Silver flowering 2	57.878
	CRR073314	Silver flowering 3	57.291
	CRR073315	Gold flowering 1	1.270
	CRR073316	Gold flowering 2	4.512
	CRR073317	Gold flowering 3	1.084
	CRR073318	Tawny withering 1	2.864
	CRR073319	Tawny withering 2	2.885
	CRR073320	Tawny withering 3	1.937