Gene detail

Detail information of GWHGAAZE000566

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGE10592.1	0	cinnamate 4-hydroxylase [Lonicera japonica]
Swissprot	tr\|Q04468\|TCMO_HELTU	0	Trans-cinnamate 4-monooxygenase
trEMBL	tr\|L7ZB58\|L7ZB58_LONJA	0	Cinnamate 4-hydroxylase {ECO:0000313\|EMBL:AGE10592.1}
TAIR10	AT2G30490.1	4E-135	cinnamate-4-hydroxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	11389482	11392591	+
GWHAAZE00000001	mRNA	11389482	11392591	+
GWHAAZE00000001	exon	11389482	11389748	+
GWHAAZE00000001	exon	11391652	11392154	+
GWHAAZE00000001	exon	11392408	11392591	+
GWHAAZE00000001	CDS	11389482	11389748	+
GWHAAZE00000001	CDS	11391652	11392154	+
GWHAAZE00000001	CDS	11392408	11392591	+

Transcript Sequence
>GWHTAAZE000568 ATGGATCTCCTCCTTCTCGAAAAATCCCTCTTAGCCCTCTTCTTCGCCGCCGTTATTGCCATTACAGTCTCCAAGCTCCGGGGCAAGCGGTTCAAACTCCCTCCGGGACCCATACCCGTACCCGTATTCGGTAACTGGCTCCAAGTCGGCGATGACCTCAACCACCGGAATCTCACTGATTTAGCAAAGAAGTTCGGCGATGTATTCATGCTCCGAATGGGCCAACGGAACCTCGTCGTCGTCTCCTCGCCGGACCTTGCAAAGGACGGGGTTGAATTCGGATCCAGGACCCGAAACGTAGTGTTCGATATCTTCACTGGCAAGGGACAAGACATGGTGTTCACGGTGTACGGTGAGCACTGGAGGAAGATGAGGCGGATCATGACCGTTCCATTTTTCACCAACAAAGTCGTGCAGCAGTACCGGTATGGGTGGGAGGATGAGGCGGCACGTGTGGTGGAGGACGTAAAGAAGATGCCGGAGGCAGCAACCACGGGGATCGTTTTGCGCAGGCGGTTGCAGCTGATGATGTATAACAATATGTACAGGATTATGTTTGATAGGAGATTTGAGAGTGAGGAGGATCCAATGTTTGTGAAATTGAAGGCATTGAATGGGGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTATAACTATGGGGATTTTATTCCGATCTTGAGGCCCTTTTTGAGAGGGTATTTGAAGATCTGTAAGGAAGTTAAGGATAGGAGGCTGCAGCTCTTCAAGGATTATTTTGTAGATGAAAGAAAGAAGCTTGGAAGCACAAAGAGCATGGATAACAATACCTTAAAATGCGCGATAGATCACATTCTAGAAGCACAAGAGAAGGGAGAGATCAACGAGGACAATGTTCTTTACATTGTTGAGAACATCAACGTTGCTGGTACGTTATTATTATTATTATTATTATTATTATTTTTGACTTCTATATAA

Network for GWHGAAZE000566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	34	303	1.70E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00487	CYP73A	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Degradation of aromatic compounds	map01220
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.669
	SRR3591706	second leaf	217.141
	SRR3591707	mature leaf	194.078
	SRR3591708	Shoot apex	132.182
	SRR3591709	Stem	598.563
	SRR3591710	White floral bud	63.695
	SRR3591711	White flower	69.512
	SRR3591712	Green floral bud	26.633
	SRR3591713	Yellow flower	42.025
SRP173429	SRR8316895	Juvenile bud stage	71.563
	SRR8316896	Juvenile bud stage	71.845
	SRR8316897	Juvenile bud stage	18.513
	SRR8316894	Third green stage	17.487
	SRR8316900	Third green stage	32.164
	SRR8316901	Third green stage	40.225
	SRR8316898	Complete white stage	4.382
	SRR8316899	Complete white stage	29.232
	SRR8316903	Complete white stage	13.472
	SRR8316902	Silver flowering stage	2.923
	SRR8316904	Silver flowering stage	5.505
	SRR8316905	Silver flowering stage	3.238
	SRR8316906	Gold flowering stage	25.029
	SRR8316907	Gold flowering stage	22.049
	SRR8316908	Gold flowering stage	83.198
SRP132670	SRR6706286	Control	62.204
	SRR6706287	Light intensity 50%	67.138
	SRR6706288	Light intensity 20%	67.138
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.638
	CNS0095593	Slightly white alabastrum(diploid) 2	29.426
	CNS0095594	Slightly white alabastrum(diploid) 3	45.897
	CNS0095595	Whole white alabastrum(diploid) 2	33.556
	CNS0095596	Whole white alabastrum(diploid) 3	11.892
	CNS0095597	Whole white alabastrum(diploid) 4	27.915
	CNS0095598	Silvery flower (diploied) 1	52.969
	CNS0095599	Silvery flower (diploied) 2	60.805
	CNS0095600	Silvery flower (diploied) 3	13.945
	CNS0095601	Golden flower (diploid) 1	47.888
	CNS0095602	Golden flower (diploid) 2	32.371
	CNS0095603	Golden flower (diploid) 3	33.649
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.428
	CNS0095606	Slightly white alabastrum(tetraploid) 3	111.008
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.862
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.815
	CNS0095610	Silvery flower (diploied) 1	14.061
	CNS0095611	Silvery flower (diploied) 2	10.517
	CNS0095612	Silvery flower (diploied) 3	10.474
	CNS0095613	Golden flower (tetraploid) 1	30.452
	CNS0095614	Golden flower (tetraploid) 2	66.016
	CNS0095615	Golden flower (tetraploid) 3	21.800
CRA001975	CRR073297	Stem 1	89.477
	CRR073298	Stem 2	77.952
	CRR073299	Stem 3	90.302
	CRR073300	Leaf 1	44.775
	CRR073301	Leaf 2	41.235
	CRR073302	Leaf 3	45.716
	CRR073303	Juvenile bud 1	19.805
	CRR073304	Juvenile bud 2	15.120
	CRR073305	Juvenile bud 3	19.506
	CRR073306	Third green 1	24.972
	CRR073307	Third green 2	6.040
	CRR073308	Third green 3	13.825
	CRR073309	Second white 1	13.400
	CRR073310	Second white 2	10.776
	CRR073311	Second white 3	12.564
	CRR073312	Silver flowering 1	41.439
	CRR073313	Silver flowering 2	55.533
	CRR073314	Silver flowering 3	51.397
	CRR073315	Gold flowering 1	24.632
	CRR073316	Gold flowering 2	47.079
	CRR073317	Gold flowering 3	36.960
	CRR073318	Tawny withering 1	62.306
	CRR073319	Tawny withering 2	49.917
	CRR073320	Tawny withering 3	99.762