Gene detail

Detail information of GWHGAAZE000593

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04047.1	8.99651E-78	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M2X3\|TRB3_ARATH	0.00000008	Telomere repeat-binding factor 3
trEMBL	tr\|A0A068U6V9\|A0A068U6V9_COFCA	3E-78	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP04047.1}
TAIR10	AT5G58340.2	2E-10	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12097867	12100400	-
GWHAAZE00000001	mRNA	12097867	12100400	-
GWHAAZE00000001	exon	12097867	12097911	-
GWHAAZE00000001	exon	12098007	12098073	-
GWHAAZE00000001	exon	12098203	12098453	-
GWHAAZE00000001	exon	12099080	12099477	-
GWHAAZE00000001	exon	12099998	12100400	-
GWHAAZE00000001	CDS	12099998	12100400	-
GWHAAZE00000001	CDS	12099080	12099477	-
GWHAAZE00000001	CDS	12098203	12098453	-
GWHAAZE00000001	CDS	12098007	12098073	-
GWHAAZE00000001	CDS	12097867	12097911	-

Transcript Sequence
>GWHTAAZE000595 ATGAAAAGGGCATACTGTGCAGTTGCAGTTCATTGTACATTGAGATTGGTAGAAGAGAATGAAGGGATTGAAATTTGGAAGTATTTTGATAAGATGTGGGTGAATAGGGTTTGTAAAATTGAGGGTTTGGGTTCGGAGGAATTGAGGAGGTGGAAGGGTGAGATTGAGAAGGGGATTTTGGATGAAAGTGTAAGAAAGAAATTGCTGCTGAGGAATTATGGGAATGATGCAGTGGAGGTGGTTAGGGTTTATGTTGAGGAAGAGAAGGAAAGAATGGGTCCTTCTTTTCTTGAATTGGTGGCTGAGAAATTGGGGGATTTTGGTACTTTGAGGAGAGTGGTTGGTTTCCAAGAAAATGGGATTTGTGATCAAGAAACGGAGAGTCTAGCTAAAATTGTTAAAGAAACGCGCCAGGGAAATTTGCCGCCCAGAAGCAAGTGTCTTCGTGGTAAAAATTGTAGAGTTGCTAAAATTTCTGACACCGCGGGATTCAAAGATAGAGTTGAGGAAGTGATTGATCCAAGTTCGTTGGGGCCAGAAAAAGCGGAGCCTCTTACTGATGCACTGCACCTGCTGGCTGAGACTGCTATTGCAAGCATGGAAAGAGAAAAACCGGACCATGAGCCTGAAGTGGGAAATAGAAAGAGGGATGATGTGAATGCTCAGAGTTCTTCTGGCGATAGGTGTGTTGATGCTGTTCAATTCGATCAAAGTGTTCTTGGAAATCCATCTGGTGAAAATTGGAGTAATGAACCGAATCCCAGCTTAATGGCACTGAATAGTACAGCTCGTTCCCATGAGTGGGAGGATTCGATTGACCACTTACCTAACTGGACTAGAGCTCAAGTCCCTAGTCCGAGGAAAAGGGTTGTTCCCCCCTTGAAAAAGAATGAAATCTCACCTAACCGGACTAGACTTCAACAAGTTCCTAGCCCGAGGAAAATGGTTGTTTCAGCCTTGAAAAATAATGAAATTCCGAAACTTTGGAAGAGGAGAAAAATCAAGAGATGGAATACCCTTGAAGAAGACACTTTGTGGACCGGCGTGCAAAAGTATGGTAAAGGAAACTGGAAGCTCATTTTGAATATGTACCGCAGCATTTTTGAAGAGAGGACAGAGGTTGATTTGAAGGACAAGTGGAGGAACTTGACGCGGTATCGATAA

Network for GWHGAAZE000593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	336	383	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.319
	SRR3591706	second leaf	0.354
	SRR3591707	mature leaf	0.648
	SRR3591708	Shoot apex	4.476
	SRR3591709	Stem	1.204
	SRR3591710	White floral bud	1.284
	SRR3591711	White flower	1.645
	SRR3591712	Green floral bud	3.031
	SRR3591713	Yellow flower	0.282
SRP173429	SRR8316895	Juvenile bud stage	2.505
	SRR8316896	Juvenile bud stage	4.269
	SRR8316897	Juvenile bud stage	0.841
	SRR8316894	Third green stage	1.753
	SRR8316900	Third green stage	3.399
	SRR8316901	Third green stage	3.845
	SRR8316898	Complete white stage	0.158
	SRR8316899	Complete white stage	3.236
	SRR8316903	Complete white stage	0.874
	SRR8316902	Silver flowering stage	0.392
	SRR8316904	Silver flowering stage	0.170
	SRR8316905	Silver flowering stage	0.069
	SRR8316906	Gold flowering stage	0.723
	SRR8316907	Gold flowering stage	0.587
	SRR8316908	Gold flowering stage	0.321
SRP132670	SRR6706286	Control	1.930
	SRR6706287	Light intensity 50%	2.150
	SRR6706288	Light intensity 20%	2.432
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.975
	CNS0095593	Slightly white alabastrum(diploid) 2	3.279
	CNS0095594	Slightly white alabastrum(diploid) 3	4.739
	CNS0095595	Whole white alabastrum(diploid) 2	2.930
	CNS0095596	Whole white alabastrum(diploid) 3	4.368
	CNS0095597	Whole white alabastrum(diploid) 4	3.056
	CNS0095598	Silvery flower (diploied) 1	2.891
	CNS0095599	Silvery flower (diploied) 2	1.857
	CNS0095600	Silvery flower (diploied) 3	1.259
	CNS0095601	Golden flower (diploid) 1	1.932
	CNS0095602	Golden flower (diploid) 2	0.980
	CNS0095603	Golden flower (diploid) 3	1.105
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.336
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.465
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.199
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.819
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.451
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.056
	CNS0095610	Silvery flower (diploied) 1	1.540
	CNS0095611	Silvery flower (diploied) 2	0.836
	CNS0095612	Silvery flower (diploied) 3	0.530
	CNS0095613	Golden flower (tetraploid) 1	0.187
	CNS0095614	Golden flower (tetraploid) 2	0.508
	CNS0095615	Golden flower (tetraploid) 3	0.107
CRA001975	CRR073297	Stem 1	4.427
	CRR073298	Stem 2	3.802
	CRR073299	Stem 3	3.006
	CRR073300	Leaf 1	3.083
	CRR073301	Leaf 2	3.256
	CRR073302	Leaf 3	2.444
	CRR073303	Juvenile bud 1	2.875
	CRR073304	Juvenile bud 2	0.626
	CRR073305	Juvenile bud 3	3.667
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.677
	CRR073308	Third green 3	0.108
	CRR073309	Second white 1	0.202
	CRR073310	Second white 2	0.378
	CRR073311	Second white 3	0.519
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.618
	CRR073316	Gold flowering 2	2.326
	CRR073317	Gold flowering 3	1.282
	CRR073318	Tawny withering 1	2.800
	CRR073319	Tawny withering 2	4.072
	CRR073320	Tawny withering 3	3.041