Gene detail

Detail information of GWHGAAZE000601

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04063.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C562\|CIPKA_ARATH	0	CBL-interacting serine/threonine-protein kinase 10
trEMBL	tr\|A0A068U8W8\|A0A068U8W8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP04063.1}
TAIR10	AT5G58380.1	1E-163	SOS3-interacting protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12267755	12269101	-
GWHAAZE00000001	mRNA	12267755	12269101	-
GWHAAZE00000001	exon	12268258	12269101	-
GWHAAZE00000001	exon	12267755	12268194	-
GWHAAZE00000001	CDS	12268258	12269101	-
GWHAAZE00000001	CDS	12267755	12268194	-

Transcript Sequence
>GWHTAAZE000603 ATGGATACCAAAGGGAGTGTACTGATGAAAAGATATGAAGTAGGAAGATTATTAGGTCAAGGCACCTTTGCTAAAGTTCACTATGGGAGGAGTCTCATTACTGGCCAAAGCGTCGCCATTAAAATTATACAGAAGGAGAAGCTTATGAAGGTCGGGCTCGTTAATCAGATCAAACGCGAAATATCTATTATGAGACTTGTTAGACACCCTTACGTCATTGAGCTTTATGAAGTGATGGCTACTAAAACCAAGATTTATTTCATAATGGAATATGCTAAAGGGGGTGAGCTCTTTAATAAGTTGGCGAAGGGTAGATTAAAGGAGGATGTTGCTCAAAAATATTTTCAACAGTTGATCAACGCTGTTGATTTCTGTCACAGCCGGGGTGTTTATCACCGCGATTTGAAGCCCGAAAACTTGCTGTTGGATGATAATGAGAATCTGAAAATTTCTGATTTTGGCTTAAGTGCTCTTCTTGAATCGAAGCGACAAGATGGGCTACTTCACACCACGTGTGGAACCCCAGCCTATGTTGCTCCTGAGGTGATCAAAATGAAGGGCTACGATGGTGCCAAAGCTGATATATGGTCGTGTGGAGTGATTTTGTTTGTTTTATTGGCTGGTTACCTTCCCTTCCATGATTCAAATTTAATGGAGCTGTATAGGAAAGTTGCAAAAGCCGATTTTAAATGTCCCAACTGGTTTCCACCAGAAATACGCCGATTACTTTTGAGGATATTGGACCCAAATCCAGTTACAAGAATATCACTTGCGAAAATTAAGGAACACCCTTGGTTTAAAAGGGGATTATTAAACTCACGACCAACAAATATTGGCTCAGCAGAAAGGCAAGAGCCATTGAAACCTACAAACTTAAACGTGTTCGATCTGATCTGGATTTCAGCTGGCTTTGACTTATCCTGCTTATTCGAGGAACATCTTCAAAAGAAAGAAACGAGATTCACCTCGAGACAACCTGCCTCTGTCATAACCTTTAAACTCGAAGAAATAGCGAAGAAGCTTAGGCTGGAAGTGGGCAAAAGAGAAGGAGGGGCATTGATAATGGAGGCAGTTAAAGAAGGTAGAAAGGGAATATTGACCATTGATGCGGAGATATTCGAGGTCACTCCATCCTTTCATATGGTGGAGATGAAGAAATCTAGCGGAGATACTTTGGAGTATCAGAAGGTGATGAAAGAGGATTTAAGACCCGGTCTCCAAGATATTGTTTGGGCTTGGCAAGGGGAACAACAAACACAACTGCAACAGTTACAGTTACCTTGA

Network for GWHGAAZE000601

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	12	266	3.00E-73
PF03822.15	NAF	289	347	7.20E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0007165	biological_process	signal transduction
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.786
	SRR3591706	second leaf	10.017
	SRR3591707	mature leaf	26.875
	SRR3591708	Shoot apex	8.540
	SRR3591709	Stem	13.876
	SRR3591710	White floral bud	14.369
	SRR3591711	White flower	5.200
	SRR3591712	Green floral bud	17.446
	SRR3591713	Yellow flower	2.409
SRP173429	SRR8316895	Juvenile bud stage	6.125
	SRR8316896	Juvenile bud stage	11.908
	SRR8316897	Juvenile bud stage	3.542
	SRR8316894	Third green stage	3.835
	SRR8316900	Third green stage	16.976
	SRR8316901	Third green stage	20.197
	SRR8316898	Complete white stage	7.482
	SRR8316899	Complete white stage	14.807
	SRR8316903	Complete white stage	6.633
	SRR8316902	Silver flowering stage	6.390
	SRR8316904	Silver flowering stage	6.372
	SRR8316905	Silver flowering stage	3.852
	SRR8316906	Gold flowering stage	10.401
	SRR8316907	Gold flowering stage	11.068
	SRR8316908	Gold flowering stage	11.235
SRP132670	SRR6706286	Control	9.383
	SRR6706287	Light intensity 50%	10.046
	SRR6706288	Light intensity 20%	9.478
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.094
	CNS0095593	Slightly white alabastrum(diploid) 2	18.304
	CNS0095594	Slightly white alabastrum(diploid) 3	25.020
	CNS0095595	Whole white alabastrum(diploid) 2	38.576
	CNS0095596	Whole white alabastrum(diploid) 3	48.950
	CNS0095597	Whole white alabastrum(diploid) 4	52.780
	CNS0095598	Silvery flower (diploied) 1	14.811
	CNS0095599	Silvery flower (diploied) 2	12.541
	CNS0095600	Silvery flower (diploied) 3	12.331
	CNS0095601	Golden flower (diploid) 1	9.832
	CNS0095602	Golden flower (diploid) 2	11.270
	CNS0095603	Golden flower (diploid) 3	10.422
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.492
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.103
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.828
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.439
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.914
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.244
	CNS0095610	Silvery flower (diploied) 1	8.699
	CNS0095611	Silvery flower (diploied) 2	10.109
	CNS0095612	Silvery flower (diploied) 3	7.217
	CNS0095613	Golden flower (tetraploid) 1	6.907
	CNS0095614	Golden flower (tetraploid) 2	6.454
	CNS0095615	Golden flower (tetraploid) 3	10.498
CRA001975	CRR073297	Stem 1	5.610
	CRR073298	Stem 2	5.636
	CRR073299	Stem 3	3.941
	CRR073300	Leaf 1	9.413
	CRR073301	Leaf 2	8.550
	CRR073302	Leaf 3	4.011
	CRR073303	Juvenile bud 1	9.714
	CRR073304	Juvenile bud 2	7.889
	CRR073305	Juvenile bud 3	3.298
	CRR073306	Third green 1	7.288
	CRR073307	Third green 2	7.203
	CRR073308	Third green 3	7.752
	CRR073309	Second white 1	4.389
	CRR073310	Second white 2	5.812
	CRR073311	Second white 3	3.886
	CRR073312	Silver flowering 1	3.759
	CRR073313	Silver flowering 2	4.751
	CRR073314	Silver flowering 3	2.526
	CRR073315	Gold flowering 1	19.486
	CRR073316	Gold flowering 2	19.680
	CRR073317	Gold flowering 3	9.301
	CRR073318	Tawny withering 1	12.998
	CRR073319	Tawny withering 2	11.512
	CRR073320	Tawny withering 3	12.212