Gene detail

Detail information of GWHGAAZE000629

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275617.3	PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
Swissprot	tr\|P93028\|UBE11_ARATH	Ubiquitin-activating enzyme E1 1
trEMBL	tr\|F6GUM1\|F6GUM1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43454.1}
TAIR10	AT2G30110.1	ubiquitin-activating enzyme 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12908009	12915746	+
GWHAAZE00000001	mRNA	12908009	12915746	+
GWHAAZE00000001	exon	12908009	12908417	+
GWHAAZE00000001	exon	12909135	12909352	+
GWHAAZE00000001	exon	12910962	12911756	+
GWHAAZE00000001	exon	12912201	12913069	+
GWHAAZE00000001	exon	12914185	12914617	+
GWHAAZE00000001	exon	12915150	12915746	+
GWHAAZE00000001	CDS	12908009	12908417	+
GWHAAZE00000001	CDS	12909135	12909352	+
GWHAAZE00000001	CDS	12910962	12911756	+
GWHAAZE00000001	CDS	12912201	12913069	+
GWHAAZE00000001	CDS	12914185	12914617	+
GWHAAZE00000001	CDS	12915150	12915746	+

Transcript Sequence
>GWHTAAZE000631 ATGAGGTTTTGTCGCGCTTTTAGCAGTTGTCTGCACTATATGCTTCCTATAAAGAGACAAGTTGAAGGTGAGGTTGTGGACGGAGGTTATAACAGTGGTGATAGCCAGAGTTTGCTTAAGAAGAATCGAATCGGTTGCTTGATTTCTTCATCGGTTACCGCCACCACTAACGGTAGCGAGAGGACCGGCGGCGAAGGTAACAGTAGCAGCCTGATAGGTGAAAGTAAAATCGGCAGTAGCGGTGTTGAACCTTCGCTGCCGGATATGGCTTTTGGCGATGGAAATCCGCAGGATATCGACGAGGATCTGCACAGTCGGCAACTCGCGGTGTATGGCCGCGAGACTATGAGAAGGCTCTTTGCTACTAATGTGCTTATCTCGGGGATGCAAGGTCTAGGTGCCGAAATTGCGAAGAATCTCATACTCGCTGGTGTCAAATCTGTAACATTGCATGATGAAGGGATGGTTGAGTTGTGGGATTTGTCCGGCAATTTCATTTTTTCGGAGAATGATCTTGGTAAGAACAGGGCAACTGCGTCCGTTCAAAAGCTGCAGGAGCTCAACAATGCTGTGGTTGTCTCTACCTTAACAACAAAATTGACTAAAGAACAACTTTCAGATTTCCAGGCTGTAGTTTTCACTGATATTAACTTAGAGACCGCGGTTGCATTCGATGATTACTGCCACAACCATCAACCTCCAATTCCATTCATCAAGGCCGAAGTACGAGGACTCTTTGGGAACGTATTCTGTGACTTTGGTCCAGCGTTCACAATTTTTGATGTTGATGGGGAGGAACCTCATACGGGCATCATTGAGTCCATCAGTAACGATAGCCCTGCACTTGTATCGTGTGTTGATGACGAAAGGCTCGAGTTTCAAGACGGTGATGTTGTTGTGTTCTCTGAAATTCGAGGAATGAGTGAACTTAATGATGGAAATCCACGGAAAATAATTTGTGCAAGACCCTACTCAATCACTCTAGATGAGGATACTACAAATTTTGGTACATATGAGAAAGGTGGTATTGTCACACAGGTGAAACAGCCGAAGGTTTTGAACTTTAAGCCTTTGAGAGAAGCACTTAAAGACCCCGAAGAGTTTTTGTTGAGTGATTTCTCTAAGTTTGACCGCCCACCCCTATTGCATTTGTCATTTCAAGCACTTGACAAGTTTTTGTCGGAATTGGGACGCTTTCCTACAGCTGGTTCAGAAGAGGATGCCCAGAAACTGATATCTATAGCTAGCAACATCAACGAGAGCTCTGAAGATGGAAAACTTCAAGATATTAACCCGATAATTTTGAGGCACTTTGCCTTTGGTGCTCGGGCGGTACTGAATCCTATGGCGGCAATGTTTGGTGGTATTGTTGGTCAGGAAGTTATGAAGGCATGCTCGGGAAAGTTTCATCCACTTTTTCAGTTTTTCTACTTTGATTCGGTTGAATCACTTCCCACCGAGCCACTGGATCCCAGCGACTTCAGACCATTGAATAGCCGATATGATGCACAGATTTCAGTTTTTGGGTCTAAACTTCAGAAGAAACTAGAAGATGCCCAAGTCTTTGTTGTTGGGTCTGGTGCACTGGGGTGTGAGTTCTTGAAGAATTTAGCTCTGATGGGAGTTTCATGCAACAACCAAGGGAAACTCACAATAACTGATGATGACATAATTGAGAAAAGTAATCTCAGTAGGCAATTCCTCTTCCGTGATTGGAACATTGGGCAGGCCAAATCCACTGTTGCTGCTTCTGCCGCTTCACTGATAAACCCCCATCTTCGGATCGAAGCATTACAGAACCGTGTGGGCTCTGAGACCGAGAACGTGTTCGATGATAGATTCTGGGAGAATCTAAGTGTTATTGTCAATGCGTTGGATAATGTCAATGCAAGACTTTATGTGGACCAGAGATGCTTATATTTCCAAAAGCCACTTCTCGAGTCGGGTACCCTAGGAGCCAAGTGCAACACTCAGATGGTTATACCTCACTTGACTGAAAACTATGGTGCCTCAAGAGATCCACCAGAGAAACAAGCGCCCATGTGTACCGTGCACTCGTTCCCACACAACATTGACCACTGCTTGACATGGGCCCGGTCGGAGTTTGAAGGATTGCTAGAGAAAACACCAGCTGAAGCAAACGCCTATCTTTCTAATCCCCTTGAATATGCCTCTGCAATGAGGAATGCTGGAGATGGTCAAGCTAGGGACAATTTGGAGCGTGTGCTGGAGTGCCTTGACAAGGACAGATGCAAAACATTTCAGGACTGCATTAACTGGGCACGTCTAAAGTTTGAAGATTATTTTTCGAACCGTGTGAAGCAATTGATTTTTACATTCCCTGAAGATGCTGCAACCAGTACAGGGGCTCTATTTTGGTCAGCCCCTAAGCGCTTCCCCCAGCCACTACAGTTTTCTGCTACTGATACGAGCCATCTCCACTTTATTATGTCTGCATCTATATTACGTGCAGAGACATTTGGCATCCCTATTCCTGATTGGGCCAAGCAACCTAAGAAGTTGGCTGAAGCTGTTGACAAAGTGATGGTCCCCGAATTTCAACCACAGAAAAACGTCAAAATTGTGACCGATGACAAAGCTACCAGCCTCTCTAATGCTTCTATAGATGACAGTGTAGCTATCAATGAACTAATCATGAAGCTAGAACAGTGTCGGACGACTCTACTGTCAAATTTCAGGATGAAACCTGTTCAGTTCGAAAAGGATGACGATACAAATAACCACATGGACCTAATAGCTGCGCTTGCCAACATGAGGGCTAGGAGTTACGGTATCCCTGAAGTCGACAAGCTGAAAGCCAAATTTATAGCCGGAAGGATTATCCCCGCAATTGCAACCTCCACAGCAATGGCCACAGGTCTTGTCTGCCTAGAGCTCTATAAGGTTCTGGACAGAGGGCACAAGGTTGAAGACTACCGCAACACATTTGCCAACCTAGCCTTACCTTTGTTCTCAATGGCTGAGCCCCTCCCGCCAAAGGTCATCAAGCACAGGGACATGCGGTGGACCGTTTGGGACCGATGGACCCTTAAAGACAACCCCACATTGAGGGAACTTTTACTGTGGCTTAAAACTAAGGGCCTCAACGCCTATAGTATTTCGTGTGGTAGTTGCTTGCTCTTCAATAGCATGTTCCCTCGGCACAAAGACCGGATGAGCAGGAAGGTGGTGGATTTAGCGAGGGAGGTGGCTAAGTTGGAGCTTCCGCCTTACCGCCGCCACTTTGATGTTGTTGTGGCGTGTGATGATGATGAGGACAATGATGTCGATATCCCTCAGGTATCGATTTACTTCCGTTAG

Network for GWHGAAZE000629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	105	479	6.80E-32
PF16190.6	E1_FCCH	278	349	5.00E-25
PF16191.6	E1_4HB	350	419	1.60E-23
PF00899.22	ThiF	501	1000	2.90E-72
PF10585.10	UBA_e1_thiolCys	688	941	6.70E-84
PF09358.11	E1_UFD	1012	1101	4.10E-20

Protein Sequence

>GWHPAAZE000630
MRFCRAFSSCLHYMLPIKRQVEGEVVDGGYNSGDSQSLLKKNRIGCLISSSVTATTNGSERTGGEGNSSSLIGESKIGSSGVEPSLPDMAFGDGNPQDIDEDLHSRQLAVYGRETMRRLFATNVLISGMQGLGAEIAKNLILAGVKSVTLHDEGMVELWDLSGNFIFSENDLGKNRATASVQKLQELNNAVVVSTLTTKLTKEQLSDFQAVVFTDINLETAVAFDDYCHNHQPPIPFIKAEVRGLFGNVFCDFGPAFTIFDVDGEEPHTGIIESISNDSPALVSCVDDERLEFQDGDVVVFSEIRGMSELNDGNPRKIICARPYSITLDEDTTNFGTYEKGGIVTQVKQPKVLNFKPLREALKDPEEFLLSDFSKFDRPPLLHLSFQALDKFLSELGRFPTAGSEEDAQKLISIASNINESSEDGKLQDINPIILRHFAFGARAVLNPMAAMFGGIVGQEVMKACSGKFHPLFQFFYFDSVESLPTEPLDPSDFRPLNSRYDAQISVFGSKLQKKLEDAQVFVVGSGALGCEFLKNLALMGVSCNNQGKLTITDDDIIEKSNLSRQFLFRDWNIGQAKSTVAASAASLINPHLRIEALQNRVGSETENVFDDRFWENLSVIVNALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEANAYLSNPLEYASAMRNAGDGQARDNLERVLECLDKDRCKTFQDCINWARLKFEDYFSNRVKQLIFTFPEDAATSTGALFWSAPKRFPQPLQFSATDTSHLHFIMSASILRAETFGIPIPDWAKQPKKLAEAVDKVMVPEFQPQKNVKIVTDDKATSLSNASIDDSVAINELIMKLEQCRTTLLSNFRMKPVQFEKDDDTNNHMDLIAALANMRARSYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDRGHKVEDYRNTFANLALPLFSMAEPLPPKVIKHRDMRWTVWDRWTLKDNPTLRELLLWLKTKGLNAYSISCGSCLLFNSMFPRHKDRMSRKVVDLAREVAKLELPPYRRHFDVVVACDDDEDNDVDIPQVSIYFR

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K03178	UBE1, UBA1	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0006464	biological_process	cellular protein modification process
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.579
	SRR3591706	second leaf	11.056
	SRR3591707	mature leaf	6.813
	SRR3591708	Shoot apex	16.341
	SRR3591709	Stem	11.494
	SRR3591710	White floral bud	7.224
	SRR3591711	White flower	5.367
	SRR3591712	Green floral bud	11.762
	SRR3591713	Yellow flower	0.615
SRP173429	SRR8316895	Juvenile bud stage	15.629
	SRR8316896	Juvenile bud stage	17.774
	SRR8316897	Juvenile bud stage	8.450
	SRR8316894	Third green stage	5.792
	SRR8316900	Third green stage	15.190
	SRR8316901	Third green stage	14.232
	SRR8316898	Complete white stage	1.470
	SRR8316899	Complete white stage	18.376
	SRR8316903	Complete white stage	3.006
	SRR8316902	Silver flowering stage	0.316
	SRR8316904	Silver flowering stage	0.615
	SRR8316905	Silver flowering stage	0.145
	SRR8316906	Gold flowering stage	0.387
	SRR8316907	Gold flowering stage	0.568
	SRR8316908	Gold flowering stage	0.454
SRP132670	SRR6706286	Control	14.130
	SRR6706287	Light intensity 50%	14.652
	SRR6706288	Light intensity 20%	16.604
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.001
	CNS0095593	Slightly white alabastrum(diploid) 2	10.393
	CNS0095594	Slightly white alabastrum(diploid) 3	8.699
	CNS0095595	Whole white alabastrum(diploid) 2	8.407
	CNS0095596	Whole white alabastrum(diploid) 3	7.821
	CNS0095597	Whole white alabastrum(diploid) 4	6.625
	CNS0095598	Silvery flower (diploied) 1	7.820
	CNS0095599	Silvery flower (diploied) 2	7.071
	CNS0095600	Silvery flower (diploied) 3	5.228
	CNS0095601	Golden flower (diploid) 1	6.154
	CNS0095602	Golden flower (diploid) 2	7.375
	CNS0095603	Golden flower (diploid) 3	6.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.452
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.340
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.965
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.609
	CNS0095610	Silvery flower (diploied) 1	1.451
	CNS0095611	Silvery flower (diploied) 2	2.909
	CNS0095612	Silvery flower (diploied) 3	1.209
	CNS0095613	Golden flower (tetraploid) 1	0.389
	CNS0095614	Golden flower (tetraploid) 2	0.561
	CNS0095615	Golden flower (tetraploid) 3	0.216
CRA001975	CRR073297	Stem 1	29.510
	CRR073298	Stem 2	25.019
	CRR073299	Stem 3	26.269
	CRR073300	Leaf 1	25.194
	CRR073301	Leaf 2	23.246
	CRR073302	Leaf 3	19.848
	CRR073303	Juvenile bud 1	19.024
	CRR073304	Juvenile bud 2	10.341
	CRR073305	Juvenile bud 3	26.901
	CRR073306	Third green 1	1.631
	CRR073307	Third green 2	1.982
	CRR073308	Third green 3	2.108
	CRR073309	Second white 1	0.267
	CRR073310	Second white 2	0.209
	CRR073311	Second white 3	0.052
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.234
	CRR073314	Silver flowering 3	0.306
	CRR073315	Gold flowering 1	7.772
	CRR073316	Gold flowering 2	11.565
	CRR073317	Gold flowering 3	10.351
	CRR073318	Tawny withering 1	10.769
	CRR073319	Tawny withering 2	7.894
	CRR073320	Tawny withering 3	7.999