Gene detail

Detail information of GWHGAAZE000710

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002276280.1	PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera]
Swissprot	tr\|Q9FHD7\|Y5126_ARATH	Probable serine/threonine-protein kinase At5g41260
trEMBL	tr\|D7THE2\|D7THE2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30458.3}
TAIR10	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14399769	14405693	-
GWHAAZE00000001	mRNA	14399769	14405693	-
GWHAAZE00000001	exon	14399769	14400029	-
GWHAAZE00000001	exon	14400857	14400970	-
GWHAAZE00000001	exon	14401478	14401636	-
GWHAAZE00000001	exon	14402562	14402651	-
GWHAAZE00000001	exon	14403127	14403212	-
GWHAAZE00000001	exon	14404062	14404167	-
GWHAAZE00000001	exon	14404273	14404406	-
GWHAAZE00000001	exon	14404923	14405058	-
GWHAAZE00000001	exon	14405180	14405403	-
GWHAAZE00000001	exon	14405612	14405693	-
GWHAAZE00000001	CDS	14405612	14405693	-
GWHAAZE00000001	CDS	14405180	14405403	-
GWHAAZE00000001	CDS	14404923	14405058	-
GWHAAZE00000001	CDS	14404273	14404406	-
GWHAAZE00000001	CDS	14404062	14404167	-
GWHAAZE00000001	CDS	14403127	14403212	-
GWHAAZE00000001	CDS	14402562	14402651	-
GWHAAZE00000001	CDS	14401478	14401636	-
GWHAAZE00000001	CDS	14400857	14400970	-
GWHAAZE00000001	CDS	14399769	14400029	-

Transcript Sequence
>GWHTAAZE000712 ATGGGAGGTCGCTGCTCCAAATTCTCCCTCTGCTGGTGGGCTACCAATTTCAAATCTAACAATCCTAGTTCCTCCGATCTCGAGAAATTTGGAGGCGAAAGTGAGCATCTATCGTTGCCTTCTTTTAGAGAATACAGTTTAGATCAACTTAAGGCTGCAACCTCAGGGTTTTCGGTGGATAACATTGTATCTGAACATGGTGAAAAGGCTCCCAATGTTGTGTATAAGGGAAAGCTTGGAGATGATCGTTGGATCGCCATTAAGCGCTTCAACAAGTCCGCTTGGCCTGATACTAAACAATTCATTGATGAATCAAAATTAGTGGGGCAGCTTAGGAGCGAGAAGTTGGTCAATTTGTTAGGATGTTGCTGTGAAGGAGAAGAGAGACTGCTTATTGCTGAGTTTATGCCTCGTGAAACTCTCTCAAAGCACCTATTTCATTGGGAGAGCCAACCATTGAAATGGACAATGAGGTTAAGAGTGGCTTTGTACTTGGCACAAGCATTGGACTATTGTAGCAATAAAGGGAGAGGACTATATCACGACCTCAATGCTTATAGAGTTTTGTTCGATCAGGATGCCAATCCCAGGCTTTCATGCTTTGGCCTGATGAAGAATAGCAGAGACGGAAAGAGCTATAGTACTAATTTGGCTTTCACCCCACCAGAGTATTTGAGGACAGGTAGAGTGACACCGGAAAGCGTAGTTTACAGTTATGGCACCCTGTTGCTTGATCTTCTCAGCGGCAAGCACATTCCTCCAAGCCATGCACTTGACCTGATACGAGGGAAGAATTTTTCGATGTTAATGGACTCGTGTTTAGAGGGTCATTTCTCAAATGATGATGGAACTGAACTAGTACCATCTTCTGTTTTGCTGCCTCATGAAACTATGTCCCCAGCAAAACCACAAAAATTGGAGCCTCTTGGTGAAGCTTGCTCGCGAGTGGATCTAACTGCCATACATGAAATATTGGAGAATCTTGGATACAAGGATGACGAGGGAGTTGCAAATGAGCTATCATTTCAAATGTGGACGAACCAAATACAGGAAACAATAAATGCAAAGAAGAATGGGGATTCTGCTTTTAAAGCTAAAGACTTAAATACTGCCATTGAGCATTACACACTCTTCATCGAGAGTGGAACAATGGTGTCGCCGACCGTGTACGCGAGGCGGTGTTTGTGTTACTTGATGAACAACAAGGGTCAGGAAGCACTGGGAGATGCAATGCAAGCTCAAGCAGTTTCTCCAGAATGGCCGGTTGCCTTTTATCTTCAAGCAGCTGCACTGTTTAGCCTGGGTATGGAAAATGATGCCAAAGAGACTCTCAAAGATGGCACTTCCTTGGATGCCAAAAGGAGAAAAGACACTAAAAAGGAAAATGTATAG

Network for GWHGAAZE000710

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	74	250	1.00E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.127
	SRR3591706	second leaf	5.659
	SRR3591707	mature leaf	0.345
	SRR3591708	Shoot apex	26.062
	SRR3591709	Stem	20.558
	SRR3591710	White floral bud	70.852
	SRR3591711	White flower	9.301
	SRR3591712	Green floral bud	60.956
	SRR3591713	Yellow flower	2.868
SRP173429	SRR8316895	Juvenile bud stage	21.251
	SRR8316896	Juvenile bud stage	38.778
	SRR8316897	Juvenile bud stage	16.992
	SRR8316894	Third green stage	14.192
	SRR8316900	Third green stage	45.527
	SRR8316901	Third green stage	45.287
	SRR8316898	Complete white stage	1.076
	SRR8316899	Complete white stage	8.723
	SRR8316903	Complete white stage	3.551
	SRR8316902	Silver flowering stage	1.320
	SRR8316904	Silver flowering stage	3.485
	SRR8316905	Silver flowering stage	0.847
	SRR8316906	Gold flowering stage	2.179
	SRR8316907	Gold flowering stage	2.878
	SRR8316908	Gold flowering stage	1.141
SRP132670	SRR6706286	Control	21.087
	SRR6706287	Light intensity 50%	22.488
	SRR6706288	Light intensity 20%	21.709
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.417
	CNS0095593	Slightly white alabastrum(diploid) 2	43.603
	CNS0095594	Slightly white alabastrum(diploid) 3	60.963
	CNS0095595	Whole white alabastrum(diploid) 2	89.846
	CNS0095596	Whole white alabastrum(diploid) 3	96.713
	CNS0095597	Whole white alabastrum(diploid) 4	108.971
	CNS0095598	Silvery flower (diploied) 1	14.711
	CNS0095599	Silvery flower (diploied) 2	20.990
	CNS0095600	Silvery flower (diploied) 3	6.719
	CNS0095601	Golden flower (diploid) 1	16.302
	CNS0095602	Golden flower (diploid) 2	9.411
	CNS0095603	Golden flower (diploid) 3	10.395
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	83.906
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.063
	CNS0095607	Whole white alabastrum(tetraploid) 1	116.503
	CNS0095608	Whole white alabastrum(tetraploid) 2	125.007
	CNS0095609	Whole white alabastrum(tetraploid) 3	59.176
	CNS0095610	Silvery flower (diploied) 1	2.079
	CNS0095611	Silvery flower (diploied) 2	10.725
	CNS0095612	Silvery flower (diploied) 3	18.262
	CNS0095613	Golden flower (tetraploid) 1	3.882
	CNS0095614	Golden flower (tetraploid) 2	2.633
	CNS0095615	Golden flower (tetraploid) 3	9.452
CRA001975	CRR073297	Stem 1	34.817
	CRR073298	Stem 2	29.710
	CRR073299	Stem 3	26.179
	CRR073300	Leaf 1	47.067
	CRR073301	Leaf 2	32.785
	CRR073302	Leaf 3	29.041
	CRR073303	Juvenile bud 1	31.465
	CRR073304	Juvenile bud 2	21.295
	CRR073305	Juvenile bud 3	9.844
	CRR073306	Third green 1	10.526
	CRR073307	Third green 2	10.823
	CRR073308	Third green 3	12.374
	CRR073309	Second white 1	1.456
	CRR073310	Second white 2	3.211
	CRR073311	Second white 3	3.391
	CRR073312	Silver flowering 1	12.067
	CRR073313	Silver flowering 2	11.162
	CRR073314	Silver flowering 3	7.954
	CRR073315	Gold flowering 1	13.279
	CRR073316	Gold flowering 2	7.397
	CRR073317	Gold flowering 3	4.446
	CRR073318	Tawny withering 1	36.584
	CRR073319	Tawny withering 2	26.026
	CRR073320	Tawny withering 3	49.407