Detail information of GWHGAAZE000794


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007016537.10DHBP synthase RibB-like alpha/beta domain,GTP cyclohydrolase II [Theobroma cacao]
Swissprottr|Q9FN89|RIBA3_ARATH0GTP cyclohydrolase-2 (Precursor)
trEMBLtr|A0A061GXJ8|A0A061GXJ8_THECC0DHBP synthase RibB-like alpha/beta domain,GTP cyclohydrolase II {ECO:0000313|EMBL:EOY34156.1}
TAIR10AT5G59750.10DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1612601916131132-
GWHAAZE00000001mRNA1612601916131132-
GWHAAZE00000001exon1613068916131132-
GWHAAZE00000001exon1612998316130201-
GWHAAZE00000001exon1612922716129552-
GWHAAZE00000001exon1612812116128250-
GWHAAZE00000001exon1612726316127559-
GWHAAZE00000001exon1612601916126406-
GWHAAZE00000001five_prime_UTR1613103416131132-
GWHAAZE00000001CDS1613068916131033-
GWHAAZE00000001CDS1612998316130201-
GWHAAZE00000001CDS1612922716129552-
GWHAAZE00000001CDS1612812116128250-
GWHAAZE00000001CDS1612726316127559-
GWHAAZE00000001CDS1612614916126406-
GWHAAZE00000001three_prime_UTR1612601916126148-
Transcript Sequence

Network for GWHGAAZE000794

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00926.20DHBP_synthase1052987.40E-71
PF00925.21GTP_cyclohydro23114741.30E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14652ribBA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Riboflavin metabolismmap00740
Folate biosynthesismap00790

Gene Ontology

GO term OntologyName
GO:0009231biological_processriboflavin biosynthetic process
GO:0003935molecular_functionGTP cyclohydrolase II activity
GO:0008686molecular_function3,4-dihydroxy-2-butanone-4-phosphate synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.657
SRR3591706second leaf20.032
SRR3591707mature leaf24.433
SRR3591708Shoot apex14.620
SRR3591709Stem11.878
SRR3591710White floral bud18.262
SRR3591711White flower15.729
SRR3591712Green floral bud10.811
SRR3591713Yellow flower16.338
SRP173429 SRR8316895Juvenile bud stage 9.610
SRR8316896Juvenile bud stage 12.726
SRR8316897Juvenile bud stage 6.860
SRR8316894Third green stage 6.287
SRR8316900Third green stage 21.092
SRR8316901Third green stage 19.665
SRR8316898Complete white stage 16.065
SRR8316899Complete white stage 26.585
SRR8316903Complete white stage 21.461
SRR8316902Silver flowering stage8.595
SRR8316904Silver flowering stage12.728
SRR8316905Silver flowering stage7.196
SRR8316906Gold flowering stage 16.004
SRR8316907Gold flowering stage 12.809
SRR8316908Gold flowering stage 12.502
SRP132670SRR6706286Control16.265
SRR6706287Light intensity 50%15.797
SRR6706288Light intensity 20%17.869
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.426
CNS0095593Slightly white alabastrum(diploid) 212.545
CNS0095594Slightly white alabastrum(diploid) 39.392
CNS0095595Whole white alabastrum(diploid) 210.097
CNS0095596Whole white alabastrum(diploid) 312.520
CNS0095597Whole white alabastrum(diploid) 411.253
CNS0095598Silvery flower (diploied) 122.836
CNS0095599Silvery flower (diploied) 223.222
CNS0095600Silvery flower (diploied) 340.744
CNS0095601Golden flower (diploid) 122.163
CNS0095602Golden flower (diploid) 227.521
CNS0095603Golden flower (diploid) 329.356
CNS0095604Slightly white alabastrum(tetraploid) 110.645
CNS0095605Slightly white alabastrum(tetraploid) 212.227
CNS0095606Slightly white alabastrum(tetraploid) 313.879
CNS0095607Whole white alabastrum(tetraploid) 19.545
CNS0095608Whole white alabastrum(tetraploid) 210.290
CNS0095609Whole white alabastrum(tetraploid) 315.934
CNS0095610Silvery flower (diploied) 146.723
CNS0095611Silvery flower (diploied) 254.763
CNS0095612Silvery flower (diploied) 328.201
CNS0095613Golden flower (tetraploid) 123.428
CNS0095614Golden flower (tetraploid) 234.137
CNS0095615Golden flower (tetraploid) 321.414
CRA001975CRR073297Stem 121.233
CRR073298Stem 216.544
CRR073299Stem 315.930
CRR073300Leaf 121.292
CRR073301Leaf 221.358
CRR073302Leaf 318.513
CRR073303Juvenile bud 121.771
CRR073304Juvenile bud 221.205
CRR073305Juvenile bud 321.764
CRR073306Third green 110.012
CRR073307Third green 210.148
CRR073308Third green 310.721
CRR073309Second white 110.943
CRR073310Second white 28.801
CRR073311Second white 36.366
CRR073312Silver flowering 14.524
CRR073313Silver flowering 22.619
CRR073314Silver flowering 33.476
CRR073315Gold flowering 145.347
CRR073316Gold flowering 252.083
CRR073317Gold flowering 334.729
CRR073318Tawny withering 110.030
CRR073319Tawny withering 29.687
CRR073320Tawny withering 37.995