Gene detail

Detail information of GWHGAAZE000829

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794082.1	1.5372E-138	PREDICTED: 3-ketoacyl-CoA synthase 12-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SIB2\|KCS12_ARATH	4E-129	3-ketoacyl-CoA synthase 12 (Precursor)
trEMBL	tr\|A0A068UMY2\|A0A068UMY2_COFCA	2E-138	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G28630.1	1E-105	3-ketoacyl-CoA synthase 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	17483304	17484137	+
GWHAAZE00000001	mRNA	17483304	17484137	+
GWHAAZE00000001	exon	17483304	17484137	+
GWHAAZE00000001	CDS	17483304	17484137	+

Transcript Sequence
>GWHTAAZE000831 ATGCTCAGCGCCGAGTTTTGTGGAGAGTTGATCAAGAGGAACAAGAACCTTGGCCTCGAGTACAAATTCCTACTCAAAGCCATTGTGAGCTCCGGGATTGGGGAGCAAACGTATGGGCCCCGTTCAGTCTTCGCTGGCCGAGAAAGAAATCCTACACACGAAGATGGTATCCACGAAATGGAAGAGTTCTTTGATAGCATCGACGTGCTTCTCAAGAGGGCACAAGTGTCCCCCTCAGAGATCGACGTGCTAGTGGTAAATGTTTCGATGCTCGCTTCTGTCCCTTCTTTGTCTTCTAGGATTATCAGTATGTACAAGATGAGGGAAGACATTAAGTCGTATAATTTGTCAGGAATGGGGTGCAGTGCCAGCCTTGTTTCAATCAATGTCGTTGAAAATATATTTAAGTCGCAAAAGAACTTAAATGCACTTGTTGTGACAACCGAGTCGTTGAGCCCTAATTCATACTCTGGCAACGAGCGATCAATGATTTTAGCTGATTGTTTGTTTCGGTCAGGAGGATGCGCAATCCTTCTGACCAATAAATCGTCTCTAAGAAACAAGGCCATGTTTAAACTGAAGTGTCTTGTCAGGACACACCATGGTGGCAGGGAAGAATCTTATAACTGTTGCATCCAGAAGGAGGACCATGCGGGCAAGCTGGGGTTTCACCTCGATAAGACCCTACCCATGGCTGCCACACGAGCTTTCATCGATAATTTTAAAGAAGCCTCACCCAAGATCCTCCCAATACTCGAAAACTCCGGTTCGCGTTATTGTCATTTCGACAAAAAATTATTAAAAGTTCGAACAATGCGGGAGCGAAGCCAGTGA

Network for GWHGAAZE000829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	3	254	6.30E-95

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.322
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.276
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.366
	SRR8316896	Juvenile bud stage	0.076
	SRR8316897	Juvenile bud stage	0.158
	SRR8316894	Third green stage	0.094
	SRR8316900	Third green stage	0.155
	SRR8316901	Third green stage	0.160
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.062
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.048
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.408
SRP132670	SRR6706286	Control	0.001
	SRR6706287	Light intensity 50%	0.024
	SRR6706288	Light intensity 20%	0.040
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.758
	CNS0095593	Slightly white alabastrum(diploid) 2	0.372
	CNS0095594	Slightly white alabastrum(diploid) 3	0.166
	CNS0095595	Whole white alabastrum(diploid) 2	0.408
	CNS0095596	Whole white alabastrum(diploid) 3	0.025
	CNS0095597	Whole white alabastrum(diploid) 4	0.071
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.063
	CNS0095600	Silvery flower (diploied) 3	0.049
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.038
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.079
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.128
	CNS0095611	Silvery flower (diploied) 2	0.020
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.030
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.521
	CRR073298	Stem 2	0.658
	CRR073299	Stem 3	0.481
	CRR073300	Leaf 1	0.039
	CRR073301	Leaf 2	0.048
	CRR073302	Leaf 3	0.067
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.293
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.160
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.251
	CRR073314	Silver flowering 3	0.182
	CRR073315	Gold flowering 1	0.246
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000