Detail information of GWHGAAZE000914


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006347195.10PREDICTED: cell division cycle protein 48 homolog [Solanum tuberosum]
Swissprottr|Q96372|CDC48_CAPAN0Cell division cycle protein 48 homolog
trEMBLtr|M1AVI1|M1AVI1_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400031321}
TAIR10AT5G03340.10ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1943681219443572+
GWHAAZE00000001mRNA1943681219443572+
GWHAAZE00000001exon1943681219436840+
GWHAAZE00000001exon1943698019437145+
GWHAAZE00000001exon1943817919438407+
GWHAAZE00000001exon1943912319439889+
GWHAAZE00000001exon1944044419440665+
GWHAAZE00000001exon1944096819441039+
GWHAAZE00000001exon1944120419441485+
GWHAAZE00000001exon1944207219442431+
GWHAAZE00000001exon1944328519443572+
GWHAAZE00000001CDS1943681219436840+
GWHAAZE00000001CDS1943698019437145+
GWHAAZE00000001CDS1943817919438407+
GWHAAZE00000001CDS1943912319439889+
GWHAAZE00000001CDS1944044419440665+
GWHAAZE00000001CDS1944096819441039+
GWHAAZE00000001CDS1944120419441485+
GWHAAZE00000001CDS1944207219442431+
GWHAAZE00000001CDS1944328519443572+
Transcript Sequence

Network for GWHGAAZE000914

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0129GO:0006415 translational termination GOslim:biological_process
GO:0006414 translational elongation GOslim:biological_process
GO:0005737 cytoplasm GOslim:cellular_component
GO:0003747 translation release factor activity GOslim:molecular_function
GO:0003746 translation elongation factor activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02359.19CDC48_N301114.90E-23
PF02933.18CDC48_21321943.40E-11
PF00004.30AAA2453741.70E-47
PF17862.2AAA_lid_33974396.60E-14
PF00004.30AAA5186518.70E-48
PF17862.2AAA_lid_36737141.40E-13
PF09336.11Vps4_C7247630.0002
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13525VCP, CDC48 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf82.026
SRR3591706second leaf53.807
SRR3591707mature leaf47.893
SRR3591708Shoot apex79.492
SRR3591709Stem83.399
SRR3591710White floral bud85.264
SRR3591711White flower102.845
SRR3591712Green floral bud90.780
SRR3591713Yellow flower80.988
SRP173429 SRR8316895Juvenile bud stage 49.903
SRR8316896Juvenile bud stage 68.235
SRR8316897Juvenile bud stage 31.042
SRR8316894Third green stage 27.063
SRR8316900Third green stage 89.103
SRR8316901Third green stage 82.317
SRR8316898Complete white stage 38.451
SRR8316899Complete white stage 98.702
SRR8316903Complete white stage 59.602
SRR8316902Silver flowering stage39.508
SRR8316904Silver flowering stage50.974
SRR8316905Silver flowering stage24.708
SRR8316906Gold flowering stage 97.791
SRR8316907Gold flowering stage 97.964
SRR8316908Gold flowering stage 104.900
SRP132670SRR6706286Control102.776
SRR6706287Light intensity 50%101.423
SRR6706288Light intensity 20%106.409
CNP0000432CNS0095592Slightly white alabastrum(diploid) 155.664
CNS0095593Slightly white alabastrum(diploid) 258.016
CNS0095594Slightly white alabastrum(diploid) 351.358
CNS0095595Whole white alabastrum(diploid) 250.621
CNS0095596Whole white alabastrum(diploid) 352.011
CNS0095597Whole white alabastrum(diploid) 451.122
CNS0095598Silvery flower (diploied) 152.577
CNS0095599Silvery flower (diploied) 253.971
CNS0095600Silvery flower (diploied) 393.821
CNS0095601Golden flower (diploid) 148.002
CNS0095602Golden flower (diploid) 287.505
CNS0095603Golden flower (diploid) 384.289
CNS0095604Slightly white alabastrum(tetraploid) 149.479
CNS0095605Slightly white alabastrum(tetraploid) 239.556
CNS0095606Slightly white alabastrum(tetraploid) 386.384
CNS0095607Whole white alabastrum(tetraploid) 136.964
CNS0095608Whole white alabastrum(tetraploid) 232.071
CNS0095609Whole white alabastrum(tetraploid) 368.298
CNS0095610Silvery flower (diploied) 177.970
CNS0095611Silvery flower (diploied) 265.898
CNS0095612Silvery flower (diploied) 356.135
CNS0095613Golden flower (tetraploid) 141.330
CNS0095614Golden flower (tetraploid) 266.899
CNS0095615Golden flower (tetraploid) 354.213
CRA001975CRR073297Stem 198.812
CRR073298Stem 292.084
CRR073299Stem 3117.165
CRR073300Leaf 1111.349
CRR073301Leaf 2111.106
CRR073302Leaf 3108.495
CRR073303Juvenile bud 1131.721
CRR073304Juvenile bud 2120.953
CRR073305Juvenile bud 3150.435
CRR073306Third green 182.871
CRR073307Third green 262.372
CRR073308Third green 375.079
CRR073309Second white 196.257
CRR073310Second white 278.994
CRR073311Second white 374.235
CRR073312Silver flowering 190.434
CRR073313Silver flowering 2112.262
CRR073314Silver flowering 390.820
CRR073315Gold flowering 184.275
CRR073316Gold flowering 2110.690
CRR073317Gold flowering 3104.662
CRR073318Tawny withering 1116.311
CRR073319Tawny withering 294.594
CRR073320Tawny withering 3104.882