Gene detail

Detail information of GWHGAAZE001024

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625407.1	0	PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SGD6\|AROD6_ARATH	0	Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (Precursor)
trEMBL	tr\|A5BWG3\|A5BWG3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68383.1}
TAIR10	AT1G08250.1	9E-171	arogenate dehydratase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	22168919	22171145	-
GWHAAZE00000001	mRNA	22168919	22171145	-
GWHAAZE00000001	exon	22170539	22171145	-
GWHAAZE00000001	exon	22169753	22169979	-
GWHAAZE00000001	exon	22168919	22169634	-
GWHAAZE00000001	CDS	22170539	22171145	-
GWHAAZE00000001	CDS	22169753	22169979	-
GWHAAZE00000001	CDS	22169239	22169634	-
GWHAAZE00000001	three_prime_UTR	22168919	22169238	-

Transcript Sequence
>GWHTAAZE001026 ATGCAATATCTTACTCCACCATCTACAATCACTCTCAAAAAATCTCTGTTGGGGATTCCATCCCCTACCCGTACGAGTCGACTCAGTCCGAATCGATTCGTAATCCACTGCGCACACCAATCCGACTCGTCAAATTTTAACTCCCGAGCCGCCTGGCAGAGCTCGTGCGCAATACTGGCCAGCAAAGTGGTATCGCAGCAACAAAACGCCGAGAAGTCAAACAATGTCGATATAACTGAAGTCAATGGCCACAAAACCCTAGATCTAGTACCGATCGATAATTTGCCGAAGCCGCTAACGATCACGGACCTGGCCCCGGCACCGATGCACGGAGCTAAGCTCCGCGTCGCGTACCAGGGAGTTCCCGGCGCGTACAGCGAAGCTGCGGCCGGGAAAGCTTATCCGAGCTGCGAAGCTATACCGTGTGATCAGTTTGAGGTCGCATTTCAAGCGGTTGAGCTTTGGATTGCTGATCGAGCGGTGCTGCCGGTGGAGAATTCGCTCGGCGGTAGTATCCACAGGAACTATGATCTACTTCTCCGGCACCGGTTGCATATTGTCGGGGAAGTTCAGCTCCCTGTGCATCACTGCCTCTTGGCACTTCCAGGGGTACGCAAAGAATACCTGAGTCGCGTAATCAGCCATCCACAAGCGCTCTCTCAATGCGAGCTCACTCTCACCAAACTTGGCCTCAACGTTGCTAGAGAAGCCGTTGATGATACCGCCGGAGCTGCTGAATTCATTGCCGCCAACAACCTCCGAGACACTGCTGCAATCGCCTCCGCACGTGCCGCCGAACTGTATGGTCTGCAGATTGTTGCAGATGGGATCCAGGACGATTTGAGCAATGTGACGAGATTCGTGATGCTAGCCCGAGAGCCAATCATACCGAGAACGGATCGACCGTTCAAAACTAGCATCGTGTTTGCTCACGACAAAGGCACATCGGTTTTGTTCAAAGTATTATCGGCTTTTGCTTTCAGGAACATTAGTCTCACCAAGATTGAGAGCCGACCTCACCGGAACCGGCCAATCAGGCTGGTCGACGATGCGAATGTAGGCACGGCAAAACATTTCGAGTACTTGTTCTACGTAGATTTTGAGGCGTCGATGGCGGAAGTTAGGGCACAAAACGCACTTGCAGAGGTTCAAGAGTTCACCACTTTTTTGAGGGTATTAGGAAGTTATCCAATGGATATGACGCCTTGGTCACCCTCGCGGGGAGATTAGCAAAATATTCTGTAAATTTCATTTATGGTTTTGATATTTGTTAAAGAAAGGGAAATGTTTAATATAAGTTAAGTGTTTATTATTTCTTTCTTTGTTTAGGTTTTAGCTTTTGTTTTGGGGAGTTTTATTTTTAGTTCACCGAGGAACAAGCAAGAATCCTGGGAAACTATTGTAGTTGATGTTCAGGAAATTTAAGTGTAAGATTGTCAATACCATTTTGCCATCCATCCTCATTTTCTATTTCTCAAATTTCAGCATATATTATTCAAAGGCGTTTTACATTTTTCCCTCTGAATGAATAAAAGAGTAAGTGGGTCTAA

Network for GWHGAAZE001024

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00800.19	PDT	116	294	2.80E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05359	ADT, PDT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0009094	biological_process	L-phenylalanine biosynthetic process
GO:0004664	molecular_function	prephenate dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.561
	SRR3591706	second leaf	61.719
	SRR3591707	mature leaf	74.003
	SRR3591708	Shoot apex	55.378
	SRR3591709	Stem	272.892
	SRR3591710	White floral bud	18.176
	SRR3591711	White flower	34.521
	SRR3591712	Green floral bud	53.854
	SRR3591713	Yellow flower	63.479
SRP173429	SRR8316895	Juvenile bud stage	31.494
	SRR8316896	Juvenile bud stage	34.949
	SRR8316897	Juvenile bud stage	14.510
	SRR8316894	Third green stage	16.047
	SRR8316900	Third green stage	57.770
	SRR8316901	Third green stage	49.376
	SRR8316898	Complete white stage	15.038
	SRR8316899	Complete white stage	60.011
	SRR8316903	Complete white stage	18.420
	SRR8316902	Silver flowering stage	9.979
	SRR8316904	Silver flowering stage	10.070
	SRR8316905	Silver flowering stage	4.987
	SRR8316906	Gold flowering stage	23.073
	SRR8316907	Gold flowering stage	20.955
	SRR8316908	Gold flowering stage	43.782
SRP132670	SRR6706286	Control	73.215
	SRR6706287	Light intensity 50%	67.864
	SRR6706288	Light intensity 20%	75.809
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.956
	CNS0095593	Slightly white alabastrum(diploid) 2	25.785
	CNS0095594	Slightly white alabastrum(diploid) 3	32.122
	CNS0095595	Whole white alabastrum(diploid) 2	21.559
	CNS0095596	Whole white alabastrum(diploid) 3	22.867
	CNS0095597	Whole white alabastrum(diploid) 4	23.182
	CNS0095598	Silvery flower (diploied) 1	24.138
	CNS0095599	Silvery flower (diploied) 2	15.517
	CNS0095600	Silvery flower (diploied) 3	30.215
	CNS0095601	Golden flower (diploid) 1	13.238
	CNS0095602	Golden flower (diploid) 2	21.216
	CNS0095603	Golden flower (diploid) 3	19.614
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.746
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.104
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.934
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.515
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	75.106
	CNS0095610	Silvery flower (diploied) 1	79.849
	CNS0095611	Silvery flower (diploied) 2	77.817
	CNS0095612	Silvery flower (diploied) 3	17.732
	CNS0095613	Golden flower (tetraploid) 1	22.367
	CNS0095614	Golden flower (tetraploid) 2	56.574
	CNS0095615	Golden flower (tetraploid) 3	9.478
CRA001975	CRR073297	Stem 1	52.192
	CRR073298	Stem 2	44.310
	CRR073299	Stem 3	42.001
	CRR073300	Leaf 1	46.070
	CRR073301	Leaf 2	57.526
	CRR073302	Leaf 3	46.169
	CRR073303	Juvenile bud 1	51.980
	CRR073304	Juvenile bud 2	49.243
	CRR073305	Juvenile bud 3	60.504
	CRR073306	Third green 1	104.142
	CRR073307	Third green 2	53.909
	CRR073308	Third green 3	76.239
	CRR073309	Second white 1	51.072
	CRR073310	Second white 2	33.731
	CRR073311	Second white 3	37.451
	CRR073312	Silver flowering 1	56.467
	CRR073313	Silver flowering 2	77.700
	CRR073314	Silver flowering 3	70.461
	CRR073315	Gold flowering 1	33.953
	CRR073316	Gold flowering 2	33.554
	CRR073317	Gold flowering 3	31.084
	CRR073318	Tawny withering 1	117.700
	CRR073319	Tawny withering 2	80.340
	CRR073320	Tawny withering 3	139.959