Gene detail

Detail information of GWHGAAZE001324

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17056.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SR05\|ANX1_ARATH	0	Receptor-like protein kinase ANXUR1 (Precursor)
trEMBL	tr\|A0A068V8T3\|A0A068V8T3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_144 {ECO:0000313\|EMBL:CDP17056.1}
TAIR10	AT3G04690.1	9E-153	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	31937731	31940339	+
GWHAAZE00000001	mRNA	31937731	31940339	+
GWHAAZE00000001	exon	31937731	31938569	+
GWHAAZE00000001	exon	31938635	31939591	+
GWHAAZE00000001	exon	31939892	31940339	+
GWHAAZE00000001	CDS	31937731	31938569	+
GWHAAZE00000001	CDS	31938635	31939591	+
GWHAAZE00000001	CDS	31939892	31940339	+

Transcript Sequence
>GWHTAAZE001328 ATGCATCGTTTCTTACATTCTTCTCCTCAATACCCACCTTGCATGGAGCGCGCCGAATCCGGGCCCGAACCGAATTCGATTTCTCTGAGCTGTGGGTCCCAGGCTGGTGGCACGGATGCCGATGGCAGGAAATGGGAATCGGATTCGAAATATCTGAATAACGATAAGTCGGTTATGGCGAAGGCCGAATTTCAAGACCCTTCGCTCCCTTCCGAAGTACCTTATATGACAGCCAGAATCTTCACAGGCGAGGCAACCTACAAGTTCGCCGTTAACGGGAGCAGCCGGTACTTCCTTAGGCTCCATTTCTATCCATCACCGTATCCGAACCAAAACACATCCAACTCGTTCTTCTCTGTCGCTGCTGGTGAGATCACCCTTCTGAGTAACTTCAGCGCGTACCTAACCGCCGAGGCTCTCTCTCAGTCTTACATAATAAAAGAGTACACGCTTGCGCCCTTAACGTCCAATGAGTTGATTGTGACATTCAAGCCCTCGGACAAGTATAGTGGATCATTTGCTTTTGTGAATGGCATTGAGCTGATCGAGTCGATCGAGTTGTTTGACCAGGATGTGACAATGGTTGGAGTTGGCTCGGACGACAGGATTGACACGAGCACCATGTCAAGCGAGACCATGATGAGGTTGAACGTTGGAGGTCAGTACATACCGCCCACGAAGGATTCAGGCGGGCTTATGAGGAGTTGGTATGACGACGTTCCCTATTTGTTCGGTGGACAAACTGGGCTTGTATACAAGGGTAACTCAACGGTTACTTACCACTCTTTACCGCCAGCGACCGCTCCTCTTGATGTATACACAACATATCGAGCTATGGGCTATTTGGTGAGGCTTCACTTTTGCGAGCTCCTTTATGACATGGTTAACGAAAGGGCGTTTACGATATACCTGAATAACCAGACTGCAGTGGTGGCAGATGTGATAGGCTGGACCAATGGTAAGAATATTCCAGTGAGGAAAGATTTCATGGTTTATGTCAATGATAAAGGGGACGACTCTATTTGGGTCGCACTTCACCCAGACCAAGATGCTCGCCCGGTCTACTACGATGCATTCCTCAATGGAATCGAGATATTTAAGCTACAGGATGGTAATAATAAGTTGGCCGGACCGAATCCAACAATGTCTGATATGATGCGGAAAAGTAAAGAGGAAAATGCTAAGGGGGAGGGAGAGAAGTCTTTTGCTCCAAAGAAGTCGTACACCACCGCGCTAATTGGCGGGGCTGCAGGAGGAGCTGCTGCATTTGGGGTAGCCGCTGCCATATGCCTGGTTGCATACAACCGGAAAAGGAGGTACCCGGGGAGCGACTCGTGCACGTCTAGTTGGCTACCAATTTACGGAAACTCTCAGACGAACTCCTCAGCGACCAAGTCCACCATATCTGGAAAGAGTCACGGAGGAAGCACCATCTCATCCGACGCGGCCTGCAACTGCCGCTACTTTTCACTGGCGGAGATTAGACAGGCCACCAAGAACTTTCACGATTCCAATGTTATCGGGGTCGGTGGTTTCGGTAAGGTCTACAAAGGGGTGATCGACGGAGATACCAAAGTGGCCATTAAGAGATCCAACCCATCTTCAGAACAAGGAGTGAATGAGTTCCAAACGGAAATAGAAATGCTTTCCAAGTTAAGGCACAGGCATTTGGTCTCTCTCATCGGGTTTTGTGAAGATAATGGTGAGATGATATTGGTTTATGATTACATGGGACGTGGAACTATGAGGGAGCATCTCTATAAGGGCAACAAGATCGTCCTCACGTGGAAGCAAAGGCCTGCACTCAATCCTAGCCTCTCCAAGGAACAAGTTAGTCTAGCAGACTATGCTCAACATTGCTATAGGAAAGGAACCCTCGAAGATATCATTGATCCCCAATTGAAAGGTAAAATAAACCCAGAGTGCTTGAAGAAGTTTGCAGAGACTGCCATCAAGTGCTTATCTGACCATGGAATCGATCGTCCCTCTATGGGAGATGTGTTGTGGAACCTCGAGTTTGCTCTCCAATTGCAAGAGAACCCCGACAACGATGGTTCTAAAGGTTCCAAGAGGAGATCAAAAGGAAGTGCTGACTTTGACAACGTCGATGAATTTGCACCCCCGCCCATCGATCATAATAGTTTCATGGAAATGCATATGAGCACGCTAAACCTCAATAGCGATAGCGACGAGGAAAACACAGACGACGTATTTTCCCAAATTGTGAATCCAAAGGGGCGGTAA

Network for GWHGAAZE001324

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	29	367	1.90E-23
PF07714.18	PK_Tyr_Ser-Thr	505	598	3.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.148
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.078
	SRR3591708	Shoot apex	0.155
	SRR3591709	Stem	1.165
	SRR3591710	White floral bud	209.207
	SRR3591711	White flower	11.428
	SRR3591712	Green floral bud	138.861
	SRR3591713	Yellow flower	6.948
SRP173429	SRR8316895	Juvenile bud stage	4.111
	SRR8316896	Juvenile bud stage	25.738
	SRR8316897	Juvenile bud stage	12.832
	SRR8316894	Third green stage	13.631
	SRR8316900	Third green stage	78.141
	SRR8316901	Third green stage	69.641
	SRR8316898	Complete white stage	0.011
	SRR8316899	Complete white stage	0.227
	SRR8316903	Complete white stage	0.157
	SRR8316902	Silver flowering stage	1.597
	SRR8316904	Silver flowering stage	4.931
	SRR8316905	Silver flowering stage	1.611
	SRR8316906	Gold flowering stage	0.548
	SRR8316907	Gold flowering stage	0.060
	SRR8316908	Gold flowering stage	0.091
SRP132670	SRR6706286	Control	50.437
	SRR6706287	Light intensity 50%	54.819
	SRR6706288	Light intensity 20%	46.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.771
	CNS0095593	Slightly white alabastrum(diploid) 2	59.889
	CNS0095594	Slightly white alabastrum(diploid) 3	80.648
	CNS0095595	Whole white alabastrum(diploid) 2	185.227
	CNS0095596	Whole white alabastrum(diploid) 3	211.254
	CNS0095597	Whole white alabastrum(diploid) 4	260.396
	CNS0095598	Silvery flower (diploied) 1	9.026
	CNS0095599	Silvery flower (diploied) 2	33.244
	CNS0095600	Silvery flower (diploied) 3	7.098
	CNS0095601	Golden flower (diploid) 1	9.491
	CNS0095602	Golden flower (diploid) 2	5.939
	CNS0095603	Golden flower (diploid) 3	5.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	106.551
	CNS0095605	Slightly white alabastrum(tetraploid) 2	120.295
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.208
	CNS0095607	Whole white alabastrum(tetraploid) 1	234.688
	CNS0095608	Whole white alabastrum(tetraploid) 2	308.034
	CNS0095609	Whole white alabastrum(tetraploid) 3	132.532
	CNS0095610	Silvery flower (diploied) 1	5.659
	CNS0095611	Silvery flower (diploied) 2	20.476
	CNS0095612	Silvery flower (diploied) 3	54.553
	CNS0095613	Golden flower (tetraploid) 1	5.938
	CNS0095614	Golden flower (tetraploid) 2	1.020
	CNS0095615	Golden flower (tetraploid) 3	22.504
CRA001975	CRR073297	Stem 1	23.240
	CRR073298	Stem 2	26.005
	CRR073299	Stem 3	11.270
	CRR073300	Leaf 1	138.115
	CRR073301	Leaf 2	87.285
	CRR073302	Leaf 3	37.206
	CRR073303	Juvenile bud 1	142.512
	CRR073304	Juvenile bud 2	91.724
	CRR073305	Juvenile bud 3	16.184
	CRR073306	Third green 1	65.478
	CRR073307	Third green 2	63.186
	CRR073308	Third green 3	61.321
	CRR073309	Second white 1	2.463
	CRR073310	Second white 2	12.249
	CRR073311	Second white 3	13.683
	CRR073312	Silver flowering 1	76.824
	CRR073313	Silver flowering 2	95.031
	CRR073314	Silver flowering 3	46.795
	CRR073315	Gold flowering 1	50.405
	CRR073316	Gold flowering 2	14.480
	CRR073317	Gold flowering 3	13.390
	CRR073318	Tawny withering 1	62.451
	CRR073319	Tawny withering 2	62.033
	CRR073320	Tawny withering 3	48.098