Gene detail

Detail information of GWHGAAZE001364

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009798987.1	0	PREDICTED: DNA methyltransferase 1-associated protein 1 [Nicotiana sylvestris]
trEMBL	tr\|V4U6K6\|V4U6K6_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR57796.1}
TAIR10	AT2G47210.1	4E-155	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	33584561	33593076	-
GWHAAZE00000001	mRNA	33584561	33593076	-
GWHAAZE00000001	exon	33592963	33593076	-
GWHAAZE00000001	exon	33592781	33592870	-
GWHAAZE00000001	exon	33591403	33591468	-
GWHAAZE00000001	exon	33591259	33591318	-
GWHAAZE00000001	exon	33589625	33589754	-
GWHAAZE00000001	exon	33589430	33589497	-
GWHAAZE00000001	exon	33589138	33589230	-
GWHAAZE00000001	exon	33588959	33589006	-
GWHAAZE00000001	exon	33588208	33588381	-
GWHAAZE00000001	exon	33587873	33587983	-
GWHAAZE00000001	exon	33586043	33586138	-
GWHAAZE00000001	exon	33585130	33585198	-
GWHAAZE00000001	exon	33584936	33584996	-
GWHAAZE00000001	exon	33584770	33584804	-
GWHAAZE00000001	exon	33584561	33584647	-
GWHAAZE00000001	CDS	33592963	33593076	-
GWHAAZE00000001	CDS	33592781	33592870	-
GWHAAZE00000001	CDS	33591403	33591468	-
GWHAAZE00000001	CDS	33591259	33591318	-
GWHAAZE00000001	CDS	33589625	33589754	-
GWHAAZE00000001	CDS	33589430	33589497	-
GWHAAZE00000001	CDS	33589138	33589230	-
GWHAAZE00000001	CDS	33588959	33589006	-
GWHAAZE00000001	CDS	33588208	33588381	-
GWHAAZE00000001	CDS	33587873	33587983	-
GWHAAZE00000001	CDS	33586043	33586138	-
GWHAAZE00000001	CDS	33585130	33585198	-
GWHAAZE00000001	CDS	33584936	33584996	-
GWHAAZE00000001	CDS	33584770	33584804	-
GWHAAZE00000001	CDS	33584561	33584647	-

Transcript Sequence
>GWHTAAZE001368 ATGGATGCGAAAGACATTTTGGGATTGCCCAAAACCCCGTTATCCATAACACAAGAGAAGAAGTCTAGACCTCAGAAAGATTCTCAAAGAAAACCTGATGGCATTTCGCGCGAGGTATACGCACTTACAGGTGGTTTGGCACCTCTTATGCCTTCACTTGATGTTACTCAATTGAAACGACGCATTCAATCTGAGAACCAGAAGATAACGTGGCAGTGGCTTCCTTTTACAAATTCTGCTCGAGATGATAACTTGCAACTTTACCACTGGGTTAGAGTTGTAAATGGTATTCCGCCAACAGGTGACTACTCGTTTGCCAAGTACAACAAGATGTGGACCAGGGAAGAGACTGATCAACTTTTTCAGTTGTGCGAACGGTTTGATCTTCGATTCATTGTGATAGCTGATAGGTTTCCATCATCTCGAACTGTGGAGGATCTGAAAAATCGCTATTATAGTGCATCTCGAGCTATATTAACTGCTAGAGCTTCATCTCCCGCTGATGTTTCTGGGCACCCTCTTGTAAAGGAACCATACAACGTTGCACAAGAGACTGAGCGTAAGCGAGCATTGTCCATGGTCCTCTCTCAAACAAAGCAGCAAGAGCGCAGGGATGTTGAGGTTCTTGCTGAAGCAAAGAAAATATCTGAGTCACGAGTGACTACGAAGGCGGCTCAAGAGACTGAGGTGGCAGTCCCATCAAGTTCTGGTCCAGATGGTGCTGAGAAAGCGATTGCCCCTGTTGATAATGAATCGCCTTCTTCCAATGTTCCGCTTTCGTCTGCAACTGCACCTCCAATCCCAGTGGCTGAGATGGCTTCAACTCTGGCTTCTCTTCGCATGCTCCGAGTTTACTTGAGAACTTACGCTCTTGACCAAATGGTGCAAGCCGCAAGCTCATCAGCTGGACTTCGGACTATTAAACGGGTTGAGCAAACTTTACAAGAACTTGGGGTTAATTTGAAACCAAAGGTTCCAACGAAAGCCGTTTGTGCAGAGCATCTTGAATTAAGAAAGGAAATACTGACTCTTCTGAATCTTCAGAAACAGTTGCAAAATAAGGAGGAAGGTTCATCTTACCGTGAGAATCCATACGCTGAAACACAAGACACCCCAAAGCGTCCACAGCTGCGTGTGGATCAGGACCGGACATTCATTCCAGATTCCTTAAGTTTTGGAGGTGATCGAGTTGGTAAAAGGGACCAGAAGCGCAAGGCACCTGGAAGATTATCAGAATCTCCTTCGTCACCAGCAACTCAGTCTAATAAAAGGCCTCGCAAGTTAAAGGCGTCAGATGGGTAA

Network for GWHGAAZE001364

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16282.6	SANT_DAMP1_like	109	158	1.20E-18
PF05499.13	DMAP1	300	355	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0045892	biological_process	negative regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.094
	SRR3591706	second leaf	10.398
	SRR3591707	mature leaf	12.337
	SRR3591708	Shoot apex	24.438
	SRR3591709	Stem	13.327
	SRR3591710	White floral bud	11.831
	SRR3591711	White flower	15.133
	SRR3591712	Green floral bud	9.909
	SRR3591713	Yellow flower	16.263
SRP173429	SRR8316895	Juvenile bud stage	12.996
	SRR8316896	Juvenile bud stage	14.185
	SRR8316897	Juvenile bud stage	6.632
	SRR8316894	Third green stage	5.894
	SRR8316900	Third green stage	15.174
	SRR8316901	Third green stage	14.121
	SRR8316898	Complete white stage	6.297
	SRR8316899	Complete white stage	18.214
	SRR8316903	Complete white stage	8.665
	SRR8316902	Silver flowering stage	6.959
	SRR8316904	Silver flowering stage	6.983
	SRR8316905	Silver flowering stage	4.704
	SRR8316906	Gold flowering stage	13.976
	SRR8316907	Gold flowering stage	15.363
	SRR8316908	Gold flowering stage	16.806
SRP132670	SRR6706286	Control	11.853
	SRR6706287	Light intensity 50%	12.259
	SRR6706288	Light intensity 20%	13.492
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.083
	CNS0095593	Slightly white alabastrum(diploid) 2	12.740
	CNS0095594	Slightly white alabastrum(diploid) 3	11.464
	CNS0095595	Whole white alabastrum(diploid) 2	12.804
	CNS0095596	Whole white alabastrum(diploid) 3	10.216
	CNS0095597	Whole white alabastrum(diploid) 4	10.936
	CNS0095598	Silvery flower (diploied) 1	12.911
	CNS0095599	Silvery flower (diploied) 2	13.093
	CNS0095600	Silvery flower (diploied) 3	15.687
	CNS0095601	Golden flower (diploid) 1	12.448
	CNS0095602	Golden flower (diploid) 2	13.652
	CNS0095603	Golden flower (diploid) 3	16.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.444
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.470
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.075
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.328
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.003
	CNS0095610	Silvery flower (diploied) 1	15.243
	CNS0095611	Silvery flower (diploied) 2	17.888
	CNS0095612	Silvery flower (diploied) 3	22.673
	CNS0095613	Golden flower (tetraploid) 1	13.185
	CNS0095614	Golden flower (tetraploid) 2	15.720
	CNS0095615	Golden flower (tetraploid) 3	17.533
CRA001975	CRR073297	Stem 1	22.327
	CRR073298	Stem 2	19.188
	CRR073299	Stem 3	22.117
	CRR073300	Leaf 1	21.472
	CRR073301	Leaf 2	22.117
	CRR073302	Leaf 3	24.816
	CRR073303	Juvenile bud 1	23.187
	CRR073304	Juvenile bud 2	19.049
	CRR073305	Juvenile bud 3	20.738
	CRR073306	Third green 1	10.461
	CRR073307	Third green 2	11.554
	CRR073308	Third green 3	11.847
	CRR073309	Second white 1	11.970
	CRR073310	Second white 2	13.753
	CRR073311	Second white 3	15.286
	CRR073312	Silver flowering 1	19.475
	CRR073313	Silver flowering 2	18.097
	CRR073314	Silver flowering 3	14.354
	CRR073315	Gold flowering 1	15.830
	CRR073316	Gold flowering 2	23.178
	CRR073317	Gold flowering 3	10.769
	CRR073318	Tawny withering 1	18.025
	CRR073319	Tawny withering 2	15.653
	CRR073320	Tawny withering 3	21.349