Gene detail

Detail information of GWHGAAZE001365

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006492456.1	6.78088E-44	PREDICTED: probable pectinesterase 53-like [Citrus sinensis]
Swissprot	tr\|Q9LK95\|MYB21_ARATH	7E-24	Transcription factor MYB21
trEMBL	tr\|F6HZC5\|F6HZC5_VITVI	2E-44	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT2G47190.1	5E-25	myb domain protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	33629182	33631919	-
GWHAAZE00000001	mRNA	33629182	33631919	-
GWHAAZE00000001	exon	33629182	33629348	-
GWHAAZE00000001	exon	33629524	33629804	-
GWHAAZE00000001	exon	33630407	33630487	-
GWHAAZE00000001	exon	33631090	33631325	-
GWHAAZE00000001	exon	33631415	33631625	-
GWHAAZE00000001	exon	33631828	33631919	-
GWHAAZE00000001	CDS	33631828	33631919	-
GWHAAZE00000001	CDS	33631415	33631625	-
GWHAAZE00000001	CDS	33631090	33631325	-
GWHAAZE00000001	CDS	33630407	33630487	-
GWHAAZE00000001	CDS	33629524	33629804	-
GWHAAZE00000001	CDS	33629182	33629348	-

Transcript Sequence
>GWHTAAZE001369 ATGAACTACTTGCGTCCGGGTGTTAGACGTGGAAACTTCTCCCTCCATGAACAGTTCCTCATTCTCCATTTCCACTCTCTCTATGGCAATCGGTGGTCCAAGATAGCTCAACACTTACCGGGAAGGACAGACAATGACATAAAGAACTACTGGAGGACTAGAGTCCAGAAGCAAGCGAAGCGCGCAGCTCAATTGCCATGTAAACAGCCAACAATTCAGAGATGCCATTCGTCACCTGCTGCTCCCCAGATTGGTCCAACAAATTCATCAGTCCTCCTCCTCGTTCTCACAAGAATATCCAACTGCCGGCTGATCGATGCATCCGCCATTTTATTGGAATTGGATGAGCCTCCTCAATCTCCGGTGGTGCTCATGAACCATGAACAAGTTTTTGGGGTAGTGCATGTTCAAAGCCCAAAATGGGAGGCGGCAGCTCAAGTCTCTTATAGTTGTGGACTTGATGATGATATGCAGTATTCTTCAGAGGCAAGTGACGACTACGCCTGCAGTGATCAGGGACACTACTGGTCAAACATTTGTGGAGGAGTACTGATCGAGCCCCCCTTAGACCTGCCTCCTCCACGGCTGTACCACATTTACCAGAACAAAATTTCAGAGTGTCTAGATAGACAAATAGACTACAAAAAATGGGTATCATGGAACCTGCAAAATTACCGTGAGAAGACCGATATCCTCTCTACTACTTTGAAATCAAAACCAATCAGTCCATCACCATTCACTGGATCCCAAATCCTTGATTCAGCTCTGAGGAAAGCAGAGCTGAAAAAACTCAGAATAAGCGTTAGCCAAGATGGAACCAGTAATTTCAAGACCATCACTGAAGCAATCAATAGCATTCCTTCATACAACAATCGCAGAGTTATTTTGGAAATAAAACCAGGAGACTCGAGTGATCCGCCAACTATCACAGGGAATGACACTGCTTCCTCTCAGAGTGGAAGAGATGGGGTGCCTTTAAATACTTTCCATAGTGCCACTGTCGCCGTTGATGCGAATTATTTTGTTGCCGTCAACATCAAATTTGAGGCAAGTGCATGCATCATCTAA

Network for GWHGAAZE001365

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	10	53	4.10E-13
PF01095.20	Pectinesterase	266	352	3.90E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0003677	molecular_function	DNA binding
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.319
	SRR3591706	second leaf	0.128
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.039
	SRR3591709	Stem	0.683
	SRR3591710	White floral bud	0.056
	SRR3591711	White flower	0.140
	SRR3591712	Green floral bud	0.203
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.020
	SRR8316897	Juvenile bud stage	0.038
	SRR8316894	Third green stage	0.016
	SRR8316900	Third green stage	0.042
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.097
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.006
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.036
	CNS0095599	Silvery flower (diploied) 2	0.030
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.661
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.235
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.233
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.631
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.212
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.022
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.020
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.009
	CRR073303	Juvenile bud 1	0.032
	CRR073304	Juvenile bud 2	0.016
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.014
	CRR073320	Tawny withering 3	0.045