Gene detail

Detail information of GWHGAAZE001368

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003518108.1	1.377E-155	PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like [Glycine max]
Swissprot	tr\|Q8LG50\|LPAT2_ARATH	1E-149	1-acyl-sn-glycerol-3-phosphate acyltransferase 2
trEMBL	tr\|I1JG72\|I1JG72_SOYBN	5E-156	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G31320.1}
TAIR10	AT3G57650.1	1E-115	lysophosphatidyl acyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	33796496	33809221	+
GWHAAZE00000001	mRNA	33796496	33809221	+
GWHAAZE00000001	exon	33796496	33796573	+
GWHAAZE00000001	exon	33798467	33798652	+
GWHAAZE00000001	exon	33801202	33801241	+
GWHAAZE00000001	exon	33801360	33801433	+
GWHAAZE00000001	exon	33802616	33802675	+
GWHAAZE00000001	exon	33804998	33805075	+
GWHAAZE00000001	exon	33805165	33805323	+
GWHAAZE00000001	exon	33806469	33806594	+
GWHAAZE00000001	exon	33807891	33807983	+
GWHAAZE00000001	exon	33809150	33809221	+
GWHAAZE00000001	CDS	33796496	33796573	+
GWHAAZE00000001	CDS	33798467	33798652	+
GWHAAZE00000001	CDS	33801202	33801241	+
GWHAAZE00000001	CDS	33801360	33801433	+
GWHAAZE00000001	CDS	33802616	33802675	+
GWHAAZE00000001	CDS	33804998	33805075	+
GWHAAZE00000001	CDS	33805165	33805323	+
GWHAAZE00000001	CDS	33806469	33806594	+
GWHAAZE00000001	CDS	33807891	33807983	+
GWHAAZE00000001	CDS	33809150	33809221	+

Transcript Sequence
>GWHTAAZE001372 ATGGCGATGGCAGCATTGGTTGTTCTTCCTTTAGGTTTACTTTTCTTACTCTCAGGCCTCATTGTTAACTTCCTTCAGAAGTTTGCAATAGGATATAAGCCTGAAACATTTGCCATCATTACTTGCATTTGCATTTTCCAGGCGTTTTTCTTCATCCTTATCCGTCCGTTCTCAAGGAGATTGTACAGAAGGATCAACACGGTAGTCGCACAACTCTTGTGGTTGGAGGTTGTTTGGATTTTTGATTGGTGGGCAAACATTAAGATTGAGCTGTACACGGATTCAGAAACTTTTCATTTAATGGGTAAAGAACACGCACTTGTCATTTCCAACCATAGAAGCGACATCGACTGGCTTGTTGGGTGGATCTTAGCTCAGCGCTCAGGCTGTCTTGGTAGTGCACTAGCTCTAATGAAGAAATCAGCAAAATTCCTCCCTGTTATAGGCTGGTCAATGTGGTTTTCTGAATACATCTTTCTGGATAGAAATTGGGTCAAAGACGAGAACAAGTTGAAGTCAGGTTTCGAACAGCTAAGTGATTTCCCTCGGCCTTTTTGGTTGGCCCTTCTTGTAGAGGGAACTCGCTTTACGCAAGCAAAGCTTTTAGCAGCTCAAGAGTATGCTGCTTCAGCAGGATTGCCCGTTCCTCGGAATCTTTTGATTCCTCGTACTAAGGGTTTTGTTTCAGCAGTAAATCATTTGCGCTCATTTGTTCCGGCAATTTATAATATTACAGTGGCTATTCCTAAAGAGGAGTCTCATCCGACAATGTTGAGAATGCTAAGAGGGCGATCTTCTGTGGTACACGTGCACTTGAAGCGACACTCAATGGATGAATTGCCAGAAACTGATAGCGGCATTGCTCAATGGTGTAGAGATGTATTTGTAGAGAAGATCCTCATCCGATTTACTCAGTCCGAATATTCAACTCCTCCTACACTGAAGCAGAACCTTCTTCCTCAGTAA

Network for GWHGAAZE001368

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01553.22	Acyltransferase	100	246	1.10E-14
PF16076.6	Acyltransf_C	259	298	4.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13523	AGPAT3_4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Phospholipase D signaling pathway	map04072

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.949
	SRR3591706	second leaf	2.513
	SRR3591707	mature leaf	0.263
	SRR3591708	Shoot apex	4.391
	SRR3591709	Stem	1.533
	SRR3591710	White floral bud	10.845
	SRR3591711	White flower	0.372
	SRR3591712	Green floral bud	11.107
	SRR3591713	Yellow flower	0.257
SRP173429	SRR8316895	Juvenile bud stage	0.960
	SRR8316896	Juvenile bud stage	3.522
	SRR8316897	Juvenile bud stage	2.170
	SRR8316894	Third green stage	1.599
	SRR8316900	Third green stage	6.304
	SRR8316901	Third green stage	6.473
	SRR8316898	Complete white stage	0.026
	SRR8316899	Complete white stage	0.236
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.062
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.104
SRP132670	SRR6706286	Control	3.666
	SRR6706287	Light intensity 50%	3.610
	SRR6706288	Light intensity 20%	2.849
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.997
	CNS0095593	Slightly white alabastrum(diploid) 2	4.392
	CNS0095594	Slightly white alabastrum(diploid) 3	5.695
	CNS0095595	Whole white alabastrum(diploid) 2	13.547
	CNS0095596	Whole white alabastrum(diploid) 3	18.265
	CNS0095597	Whole white alabastrum(diploid) 4	23.113
	CNS0095598	Silvery flower (diploied) 1	0.896
	CNS0095599	Silvery flower (diploied) 2	1.316
	CNS0095600	Silvery flower (diploied) 3	0.181
	CNS0095601	Golden flower (diploid) 1	0.627
	CNS0095602	Golden flower (diploid) 2	0.640
	CNS0095603	Golden flower (diploid) 3	0.389
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.088
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.253
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.251
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.804
	CNS0095610	Silvery flower (diploied) 1	0.179
	CNS0095611	Silvery flower (diploied) 2	1.357
	CNS0095612	Silvery flower (diploied) 3	2.032
	CNS0095613	Golden flower (tetraploid) 1	0.424
	CNS0095614	Golden flower (tetraploid) 2	0.304
	CNS0095615	Golden flower (tetraploid) 3	1.905
CRA001975	CRR073297	Stem 1	2.893
	CRR073298	Stem 2	2.149
	CRR073299	Stem 3	2.204
	CRR073300	Leaf 1	5.715
	CRR073301	Leaf 2	4.623
	CRR073302	Leaf 3	3.413
	CRR073303	Juvenile bud 1	6.121
	CRR073304	Juvenile bud 2	6.022
	CRR073305	Juvenile bud 3	0.850
	CRR073306	Third green 1	3.121
	CRR073307	Third green 2	4.475
	CRR073308	Third green 3	2.690
	CRR073309	Second white 1	0.716
	CRR073310	Second white 2	0.837
	CRR073311	Second white 3	0.739
	CRR073312	Silver flowering 1	4.032
	CRR073313	Silver flowering 2	3.093
	CRR073314	Silver flowering 3	2.009
	CRR073315	Gold flowering 1	2.781
	CRR073316	Gold flowering 2	1.245
	CRR073317	Gold flowering 3	2.518
	CRR073318	Tawny withering 1	2.518
	CRR073319	Tawny withering 2	2.383
	CRR073320	Tawny withering 3	4.288