Gene detail

Detail information of GWHGAAZE001450

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008359732.1	2.7474E-121	PREDICTED: syntaxin-81-like isoform X1 [Malus domestica]
Swissprot	tr\|P59277\|SYP81_ARATH	5E-94	Syntaxin-81
trEMBL	tr\|A0A022QT72\|A0A022QT72_ERYGU	3E-121	Uncharacterized protein {ECO:0000313\|EMBL:EYU30483.1}
TAIR10	AT1G51740.1	1E-76	syntaxin of plants 81

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	43584798	43587706	-
GWHAAZE00000001	mRNA	43584798	43587706	-
GWHAAZE00000001	exon	43587635	43587706	-
GWHAAZE00000001	exon	43587451	43587530	-
GWHAAZE00000001	exon	43586877	43586960	-
GWHAAZE00000001	exon	43586677	43586781	-
GWHAAZE00000001	exon	43586342	43586485	-
GWHAAZE00000001	exon	43585696	43585962	-
GWHAAZE00000001	exon	43585444	43585575	-
GWHAAZE00000001	exon	43584798	43585170	-
GWHAAZE00000001	five_prime_UTR	43587635	43587706	-
GWHAAZE00000001	five_prime_UTR	43587529	43587530	-
GWHAAZE00000001	CDS	43587451	43587528	-
GWHAAZE00000001	CDS	43586877	43586960	-
GWHAAZE00000001	CDS	43586677	43586781	-
GWHAAZE00000001	CDS	43586342	43586485	-
GWHAAZE00000001	CDS	43585696	43585962	-
GWHAAZE00000001	CDS	43585525	43585575	-
GWHAAZE00000001	three_prime_UTR	43585444	43585524	-
GWHAAZE00000001	three_prime_UTR	43584798	43585170	-

Transcript Sequence
>GWHTAAZE001454 TAATGGACTGACGTGCAATGATAATTTTTCGAAACTATTCCAATTAGGCCAATAGAGTTGCTCATATAAGAGGAATGTCGAAAACTAGGGATAGAACTGAAGACTTCAAAGATGCTGTTCACCGGGCAGCGTTGTCTCTGGGTTATACTGAGTCCAAAATGGCAGCCATATTGGCATCATTCATTATGCAAAAACCTCGACAAAGGCCATCTTTCACCAAAGCTGCACTCAAGACGCTAGAGAGCATTGGAGAACTTGAGCAGTTCTTAATGAAGCACAGGAAGGATTATATAGATCCACATCGAACTACCGAACAGGAGAGAGATAGCATCGAGCATGAAGTTACAGTTTTTATTAAAGCATGCAAAGAACAGATAGATATTCTCAGAACAAGTATAAATGACAACGAGGCAACGGGGAAGGGCTGGCTTGGTATTAGGGGGGAAAATGCTAATGCCGATACGATTGCACACAAACATGGAGTGGTTTTGATTTTAAGCGAAAAGCTTCATGCGGTCACATCACAGTTTGATCAGCTGCGAGCAATACGCTTCCAAGATGCTATAAACCGAGCTATACCAAGAAGAAAAGCTAAGCTGAATGACAGAAGAAATTCTACTGATACCTCTAAGTCTAATAATTTGGAGCACATAGAGCCCAACACTTCTGAAGTGAGAGAGTCTGATGAATTTCAACGTGAGCCTAATACAGTCCAGCAACAACTTTTGGATGACGAGACACGTGCTCTTCAGGCGGAGTTGACAAGTCTTCTAGATGCTGTTCAAGAACGGAAACAAAGATGATTGAAATGTCTGCATTGAATCATCTCATGTCTACACACGCAGCTGCAACAGGCTCAACAGATAGAGCTTCTGTATGAGCAGGCGGTCGAAGCTACAACAAATGTAGAACTCGGGAACAAAGAACTGTCTCAAGCCATCCAACGAAATAGCAGTAGCAGAACTTTCCTTTTGCTTTTCTTATTTGTACTTACTTTTTCTGTCCTTTTTCTTGATTGGTATGGTTAATTCATAAATGGAGAGATGAATTTTGAAAGATTTAATAGGCAAGTAAAATAGGAAAAAAGAAGAGGAAAAAAGGATTAACTCATTAGTTAATCAAATTTCTGAAAATGCTTGTATGTAAATGGGATGAACCTTTACTTTGTGTATTAACTTGTGTGTTACTGTTTATATTTATACATATATACATCCTCCTTGGAGAGGTTTTTACATTATGCATAGAAAAATATTTGAG

Network for GWHGAAZE001450

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10496.10	Syntaxin-18_N	5	86	1.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08492	STX18	SNARE interactions in vesicular transport	map04130
K08492	STX18	Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.851
	SRR3591706	second leaf	0.739
	SRR3591707	mature leaf	0.976
	SRR3591708	Shoot apex	1.892
	SRR3591709	Stem	2.527
	SRR3591710	White floral bud	0.951
	SRR3591711	White flower	1.412
	SRR3591712	Green floral bud	1.714
	SRR3591713	Yellow flower	0.949
SRP173429	SRR8316895	Juvenile bud stage	2.943
	SRR8316896	Juvenile bud stage	4.591
	SRR8316897	Juvenile bud stage	2.693
	SRR8316894	Third green stage	2.268
	SRR8316900	Third green stage	6.172
	SRR8316901	Third green stage	6.365
	SRR8316898	Complete white stage	2.581
	SRR8316899	Complete white stage	7.299
	SRR8316903	Complete white stage	2.736
	SRR8316902	Silver flowering stage	2.351
	SRR8316904	Silver flowering stage	3.881
	SRR8316905	Silver flowering stage	1.677
	SRR8316906	Gold flowering stage	7.122
	SRR8316907	Gold flowering stage	6.586
	SRR8316908	Gold flowering stage	7.255
SRP132670	SRR6706286	Control	5.676
	SRR6706287	Light intensity 50%	6.245
	SRR6706288	Light intensity 20%	6.442
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.845
	CNS0095593	Slightly white alabastrum(diploid) 2	6.506
	CNS0095594	Slightly white alabastrum(diploid) 3	5.799
	CNS0095595	Whole white alabastrum(diploid) 2	7.694
	CNS0095596	Whole white alabastrum(diploid) 3	7.341
	CNS0095597	Whole white alabastrum(diploid) 4	7.389
	CNS0095598	Silvery flower (diploied) 1	7.641
	CNS0095599	Silvery flower (diploied) 2	4.968
	CNS0095600	Silvery flower (diploied) 3	4.970
	CNS0095601	Golden flower (diploid) 1	4.398
	CNS0095602	Golden flower (diploid) 2	4.457
	CNS0095603	Golden flower (diploid) 3	4.908
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.329
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.940
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.470
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.493
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.137
	CNS0095610	Silvery flower (diploied) 1	7.626
	CNS0095611	Silvery flower (diploied) 2	5.574
	CNS0095612	Silvery flower (diploied) 3	6.037
	CNS0095613	Golden flower (tetraploid) 1	4.145
	CNS0095614	Golden flower (tetraploid) 2	6.622
	CNS0095615	Golden flower (tetraploid) 3	3.195
CRA001975	CRR073297	Stem 1	4.660
	CRR073298	Stem 2	4.263
	CRR073299	Stem 3	3.574
	CRR073300	Leaf 1	5.665
	CRR073301	Leaf 2	5.462
	CRR073302	Leaf 3	3.759
	CRR073303	Juvenile bud 1	3.222
	CRR073304	Juvenile bud 2	1.705
	CRR073305	Juvenile bud 3	2.945
	CRR073306	Third green 1	0.851
	CRR073307	Third green 2	0.954
	CRR073308	Third green 3	1.773
	CRR073309	Second white 1	0.724
	CRR073310	Second white 2	2.336
	CRR073311	Second white 3	1.242
	CRR073312	Silver flowering 1	1.095
	CRR073313	Silver flowering 2	0.738
	CRR073314	Silver flowering 3	0.582
	CRR073315	Gold flowering 1	1.691
	CRR073316	Gold flowering 2	2.473
	CRR073317	Gold flowering 3	0.579
	CRR073318	Tawny withering 1	5.601
	CRR073319	Tawny withering 2	4.780
	CRR073320	Tawny withering 3	6.605