Gene detail

Detail information of GWHGAAZE001610

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002299115.2	1.1819E-148	oxidoreductase family protein [Populus trichocarpa]
Swissprot	tr\|Q9LHN8\|F6H1_ARATH	2E-123	Feruloyl CoA ortho-hydroxylase 1
trEMBL	tr\|B9GLG4\|B9GLG4_POPTR	4E-149	Oxidoreductase family protein {ECO:0000313\|EMBL:EEE83920.2}
TAIR10	AT3G13610.1	5E-100	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	54417051	54419258	-
GWHAAZE00000001	mRNA	54417051	54419258	-
GWHAAZE00000001	exon	54418753	54419258	-
GWHAAZE00000001	exon	54417051	54417384	-
GWHAAZE00000001	CDS	54418753	54419258	-
GWHAAZE00000001	CDS	54417051	54417384	-

Transcript Sequence
>GWHTAAZE001614 ATGGCTCCAACAATAGCAACCTCACTTCCCATTTCATGGGATGTGAAGACTTTTGTACTGACCCAAGGGCATGGAGTAAAGGGACTTTCAGACATGGGCCTAAAAGCCCTACCTCCCCAATACATCCAACCACAATCCGAGAGGCTCGAACCGAGCAACGTGGCTGTCGAAGAGTCCGTGCCTGTGATCGACATGTCCAAATGGCATGATCCTAATGTGGCCAACTTGATATGCGAGGCGGCAGAGAAATGGGGATTCTTTCAGATCATTAATCACGGAGTGGAAATCCAAGTGCTGGAGAATGTAAAGGCCGCAACTCACCGGTTCTTTGAGTTACCTGCCGAGGAGAAGAAAAAGTACTCAAAGGAGAATTCGCGTTCGAATAGTGTACGGTTTGGCACGAGCTTTACGCCCGATGCTGAGAACGCTCTGGAGTGGAAAGATTACCTTAGCCTCTTCTATGTCTCCGATGACGAGGCCGCTTCTCTCTGGCCTCCTGTTTGCAAGGATCAAGCACTAGAATACAAGAAGAGCACCGAAGTTGTTATTAGGAAGCTACTAGAAGCCCTAATGAAAAGATTGAATGTAACCCATATCAACAAAACAAAAGAATTGCTTCTAATGGGATCAAAGAGAATCAACCTTAACTACTACCCCACATGCCCTAACCCTGAGCTCACAGTCGGGGTGGGCCGGCATTCCGATGTATCTACACTAACTATCCTCCTCCAAGACGAGATCGGAGGGCTTTATGTTCGAAAGAGCGGCGAAAATTGGATCCATGTCCCACCGGTTGGTGGATCACTTGTGATCAACGTAGGAGATGCTCTTCGATTATGA

Network for GWHGAAZE001610

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	60	165	3.40E-22
PF03171.21	2OG-FeII_Oxy	215	278	3.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06892	F6H	Biosynthesis of secondary metabolites	map01110
K06892	F6H	Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.295
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.043
	SRR3591709	Stem	0.213
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.046
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.186
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.178
	SRR8316894	Third green stage	0.039
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.011
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.279
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.026
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.110
	CRR073319	Tawny withering 2	0.212
	CRR073320	Tawny withering 3	0.000